RNA id: TU22218


Basic Information

Item Value
RNA id TU22218
length 627
lncRNA type sense_over
GC content 0.37
exon number 1
gene id AMCG00017061
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43280237 ~ 43286603 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGGATTTCACCCACAAAACTAACATTTGCAACATTGCCGACTATTACAGCTttctcaatatatttttttcagtagaTCACTGTTTGTTTCCCCTTGCATAGTTATGCAAATTAAGAAGTCTGTCATCCCATCATATTGGCTAAACCTTTTTCACTTTCCTCACTCGAGAGATCATTCTAGTCTCCAAGGAGCAGCAGAAAAGACCTTGTGTAATTTGTCCTCAAAATGTAGAAGGCTGGGTAACTGTAAATAGGCAATCTGCATGCGGCTGAGAGTATtgacacccttcatttgaaacttaAGTTAGTAATTATTTGTCAGCTATAACTCCCCACCCCCTCATTTTCCCTCTTCCTTAAAGGACATGAGctattttcaattcaatattgTCACTCACGTtgtactaatactactactaatacatgTTTTGCATGTGTGGTAAGTTCCAGGCTGACAAGAAAATTACGATCTAAAATGGTATGTGCGCTATACTTCCAGTAGGTGGCAGACTGCTCACTTACAGTGTTGAGGATACCAGGGAATGGTTccgtttttttatttgttttttttaatatatataaatgtattgtaaattggaatccCATCACCTTCTAGATTAAATATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22214 lncRNA downstream 44201 43235805 ~ 43236036 (-) True G17910
TU22171 lncRNA downstream 305804 42966356 ~ 42974433 (-) True AMCG00017051
TU22024 lncRNA downstream 728464 42550325 ~ 42551773 (-) True G17754
TU22026 lncRNA downstream 730819 42544360 ~ 42549418 (-) True G17755
TU21787 lncRNA downstream 1341703 41936926 ~ 41938534 (-) True AMCG00017014
TU22237 lncRNA upstream 24910 43305773 ~ 43308614 (-) False AMCG00017060
TU22340 lncRNA upstream 352358 43633221 ~ 43633422 (-) True G18015
TU22342 lncRNA upstream 352907 43633770 ~ 43634422 (-) False AMCG00017067
TU22403 lncRNA upstream 556314 43837177 ~ 43891907 (-) True G18066
TU22443 lncRNA upstream 855325 44136188 ~ 44138542 (-) True G18101
AMCG00017064 mRNA downstream 9268 43155639 ~ 43270969 (-) True AMCG00017064
AMCG00017062 mRNA downstream 124604 43131350 ~ 43155633 (-) True AMCG00017062
AMCG00017063 mRNA downstream 151571 43127256 ~ 43128666 (-) True AMCG00017063
AMCG00017052 mRNA downstream 278305 43000826 ~ 43001932 (-) True AMCG00017052
AMCG00017051 mRNA downstream 305921 42948991 ~ 42974316 (-) False AMCG00017051
AMCG00017058 mRNA upstream 10462 43291325 ~ 43296289 (-) True AMCG00017058
AMCG00017057 mRNA upstream 17081 43297944 ~ 43301808 (-) True AMCG00017057
AMCG00017060 mRNA upstream 24834 43305697 ~ 43308626 (-) True AMCG00017060
AMCG00017059 mRNA upstream 63607 43344470 ~ 43364869 (-) True AMCG00017059
AMCG00017067 mRNA upstream 353433 43634296 ~ 43659602 (-) True AMCG00017067
TU22128 other downstream 415621 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 2063006 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 5221298 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 5221298 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 5521766 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 5208264 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 8149992 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 8164724 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 8164724 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 8575383 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile