RNA id: AMCG00017062


Basic Information

Item Value
RNA id AMCG00017062
length 3785
RNA type mRNA
GC content 0.41
exon number 15
gene id AMCG00017062
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43131350 ~ 43155633 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaaaacctgAGAACCCCAAACAacgttttttcccccccccagGAGGTTTCGCTAATGATCTTACATCGCCATGGCAACCACTATGGAGGTGCTAGCTCAGCAGATAGTGGACACAGAGCAggtggctgagGTCCAGACCGTGCAGACCTCCACCCCAGACTCCTCAGTGATGAGCAGCTCTCCACAGAGAATTCAGATCATCTCGGCAGACTCTGCAGTCACCTCTCCACAGCGCATACAGaTTGTAACGGACCAGCAGACCGGCCAGAAAATCCAGATAGTCACAGCAGTGGATCCAACAAGCACTTCCaaacaacagtttattttaaccacTCCTGATGGATCTGGTGCAGGAAAGGTGATCCTGGCCTCCCCAGAGACGTCTAATACCAAACAGCTCATTTTTACAACAGCCGACAACATCGTGCCAGGAAGAATACAGATTGTCACAGATGCAGCTTCAGTGGAGCGTTTGCTGGGGAAGACGGATGTGGGCCGAGCACAGCCGGTGGAGTACTGTGTTGTGTGCGGAGACAAGGCATCAGGTCGGCATTATGGCGCGGTTAGCTGCGAGGGATGCAAAGGCTTCTTCAAGAGGAGTGTGAGGAAGAACCTAACCTACAGTTGCCGTAGCAACCAGGACTGCATTGTCAATAAGCACCACCGAAACCGCTGCCAATTCTGCCGGCTGaaaaaatgtttagaaatgGGCATGAAAATGGAATctgtGCAGAGTGAAAGAAAGCCAATAGACTTGCCAAGAGAGAAACCTGCTAACTGTGCAGCCTCAACAGAGAAAATCTATATCAGGAAGGACCTGCGGAGCCCTCTCATTGCAACCCCCACATTCATCACAGATAAAGATGGCTCAAGGTCTAGTCTCCTAGACCCTGGGATGTTAGTAAATATTCAGCAGCCTTTGATACAAGCAGATGGAACATTACTTTTAGCTACAGATTCAAAGgCTGAGTCTAGTCAAGGCGATTTGGGTACTTTAGCAAATGTGGTCACTTCGCTTGCTAACCTTAATGAATCCCTGAACAATGGAGACACCTCAGAAATGCAGCAGGAGGACCAGTCTGCCAGTGAAATAACACGTGCCTTTGACACTTTGGCAAAAGCACTGAACCCATCCGACACCAGTGCGGCCCAGAACCTCGCAGAGGGAGCCGACACAGCGGGGGGTGCCAGCATCCAGGTGATCAGCAGAGACCAGTCAACCCCCATCATCGAGGTGGAAGGACCCCtcctcacagacacacatgttAGTTTTAAGCTGACAATGCCAAGCCCCATGCCAGAATACCTGAATGTACACTATATCTGTGAATCGGCCTCTCGACTGCTGTTTCTTTCCATGCACTGGGCCAGATCCATCCCTGCATTCCAAGCACTTGGTCAAGATTGCAATACCAGCCTAGTCCGCGCCTGCTGGAACGAGCTGTTTACACTCGGCTTGGCACAGTGTGCGCAGGTCATGAGTCTCTCCACGATCCTCGCGGCTATCGTCAACCACCTGCAGAACAGCATACAGGATGACAAGTTGTCAGGGGACAGAATAAAACTGGTGATGGAGCACATCTGGAAACTACAGGAGTTTTGTAACAGCATGGCTAAATTGGAAATAGATGGATATGAATATGCTTACCTTAAGGCTATTGTACTGTTCAGTCCTGATCACCCCGGCCTGAGCAGTATGAATCAGATCGAAAAATTTCAGGAGAAGGCACAGATGGAGTTACAAGATTATGTTCAGAAAACATATCCAGATGACACTTACAGaTTAGCACGTATACTGATGCGTCTCCCAGCACTTCGGCTAATGAGCTCCAGCATAACTGAGGAGCTGTTCTTCACTGGCCTCATAGGGAACGTTCCCATTGACAGTATAATACCTTACATCTTGAAAATGGAAACAGCAGAATACAACAGCCAGATCACAGGGACCTCTGCATAGTCTGTACTTTCAGCATATAGCCACTGTTTAAAGCTggcgtttttatttattttttttaatgtcttttggTTCTTATTGCTTGAtgcaaagcagagaaaaaagaaatgtatcagGGCTACAgtctacactttttttttcccacatgTACTCTTATCACTGCGTCAGGCCTATTGTAAATTAGAAACAAAGTTTCATATGTGATTACTAtcttaaaagattaaataatggAGATGTAAGACTCCAAGTGCACCTTCAGATAAGATTCCGTTGCTGGACCAGATTTCTGCTCATACTTTGCATCTGAAATGGAATGAGTCTCCTCAAATTGTGTTAATGCCtttctattcatttttaatagtgTTATGGCAAATATTGGCAGCGGTACCATCTTTTGTAAACATTCAGTTCGTTAagccttttttaatgttttttattaaaatgcaagtgttttgtttataataaataatactaacCATATAAGTTCTGCTACTGCTAATGATAGCAAGTTTTGACAAACACGTTTAATGccatataattaatatgaaaagcCTTTACATGCCATTTACTAAAACACAATTGAAGTGTGCAACATTAggtagaaatattaaattatataaatgtttattagaTAATAAGTGATTTACATTTACACCATGAAGGTTGTACTAGCTATTCAATACAAACGTCTGGATAAGGAAGCTTTACCTTTAACAATAAGCAATGTTTACGGGAATGTTGAATTTCTGATCCTATTGCTGTCTTTTAGGCAGGTTAAACAGTTGCCAGTACCACACTGAGCAGTATTTGACTGTATTGTGGTAGTTGTGCTTAAGTTCCAGACTTCTCAGTTCAAGTAGTTTGGAATTGACCAGAACCttgatatacaatatatatgctTTTTCTTATTCCGTGTAATAATATTTTGagcacttttttcattttttttcatgggTGCAAAATCAAATGGTTGTATTGTGTTTCGTGTAACTAGCAATTACACAATAACATCAGTGGCTTTCTCTTGATTATGGAAGGAAACAAGCATGCAtttctaaatcaaaacaaaaaatgaaaataatttaaatttacagtTTCTTAACACAGTTAAGAATCTAATACTTACATGCTTCATTGTGAGGtactgcaaatatatatttcaaattgaatgcctataaatgtatttcttacatTGGAAACTCATTATGAATTAAATTTAGCCTAGCATTCACCAGTAAAGAATGATTCGGTATAACTGTAGGTGCAGGCAGTTCAATTATTAGATATATTATTCCTTGTTACAGATAAGTTTTGATTCAGACCCctacaaaatgtaatgcattgctTATAAAGTCCCAGACTTAAAAATCTTATTAATGGAGCCTGATTCTAAATTGGACCCTTCATCGTGTTTTGTATGTAAAATCTAACACTTTAATTTGCTGCCATGACAATCAAATGCTGTATGAGATGCTCGCTATGTTGTGAAAGAGTAGCAGTTTcttgatttatgattttttttctgtctgtttgtttttaaacatgttaagcCTTCTATCTtcacagaagaataaaaaataaagggttTGCAGACTAGTAAGGCTTTGTACATCAGCTTACATGCTGTACTTCATAGTTCCATGAAGAGTGACAAACACTGTGGGTCTTATGTGAAGacatgcttttgcttttgtcgTTTTACAAGCAAGAACTCTTGTTTCCTTGATTTGAAATGAATTATAGTGTTGTAAATAGGTTTTTGTCTGCgtggcaatgttttcttttgcataGCAAAGCATTTCAGAATATTAAAAGAATTACTAGCTGTtg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08544 NR2C2, TR4; testicular receptor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22171 lncRNA downstream 156917 42966356 ~ 42974433 (-) True AMCG00017051
TU22024 lncRNA downstream 579577 42550325 ~ 42551773 (-) True G17754
TU22026 lncRNA downstream 581932 42544360 ~ 42549418 (-) True G17755
TU21787 lncRNA downstream 1192816 41936926 ~ 41938534 (-) True AMCG00017014
TU21724 lncRNA downstream 1525955 41601924 ~ 41605395 (-) True G17505
TU22214 lncRNA upstream 80172 43235805 ~ 43236036 (-) True G17910
TU22218 lncRNA upstream 124604 43280237 ~ 43280863 (-) False AMCG00017061
TU22237 lncRNA upstream 150140 43305773 ~ 43308614 (-) False AMCG00017060
TU22340 lncRNA upstream 477588 43633221 ~ 43633422 (-) True G18015
TU22342 lncRNA upstream 478137 43633770 ~ 43634422 (-) False AMCG00017067
AMCG00017063 mRNA downstream 2684 43127256 ~ 43128666 (-) True AMCG00017063
AMCG00017052 mRNA downstream 129418 43000826 ~ 43001932 (-) True AMCG00017052
AMCG00017051 mRNA downstream 157034 42948991 ~ 42974316 (-) False AMCG00017051
AMCG00017050 mRNA downstream 194801 42919702 ~ 42936549 (-) True AMCG00017050
AMCG00017049 mRNA downstream 226304 42856124 ~ 42905046 (-) True AMCG00017049
AMCG00017064 mRNA upstream 6 43155639 ~ 43270969 (-) True AMCG00017064
AMCG00017061 mRNA upstream 124787 43280420 ~ 43286603 (-) True AMCG00017061
AMCG00017058 mRNA upstream 135692 43291325 ~ 43296289 (-) True AMCG00017058
AMCG00017057 mRNA upstream 142311 43297944 ~ 43301808 (-) True AMCG00017057
AMCG00017060 mRNA upstream 150064 43305697 ~ 43308626 (-) True AMCG00017060
TU22128 other downstream 266734 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 1914119 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 5072411 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 5072411 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 5372879 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 5333494 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 8275222 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 8289954 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 8289954 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 8700613 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile