RNA id: AMCG00017063


Basic Information

Item Value
RNA id AMCG00017063
length 519
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00017063
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43127256 ~ 43128666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTATGAAAGGAAGGTTCCCCATTAGGAGAACCCTAGAGTATCTCCAGAAAGGGGAGATCGTGTTTAAAAACACGGTGAAGATCATGACGGTTAATTTCAACACGCATGGGGAGCTCAGCGATGGGGCAAGGAAGTTTGTGTTCTTTAACGTCCCTCAAATCCAGTACAAAAACCCTTGGCTCCAGATTGTGATGTTTAAAAACGTGACGCCATCGCCATTCCTAAAGTTCTATCTGGATGATGGTGAGCAGGTCCTGGTGGATGTGGAAGGAAAGGACCATAAACAAATTACCCAGCATGTGCACAAGATCCTGGGCAAAACTCCAGAGGTTCTACAGGCTGAGGAACTGGCGAGAAAGGTAGCTTCCAACCCTGCCAACTTTGGCCCCAAGAAGTACTGTCTGAAGGAGTGCATGTGTGAAGTGGAGGGCCAAGTACCCTGTCCAGCCCTGGTGACCATACCCAAGGAAATGACAGGCAAATACAAGGCAAAGATGAATGCTGCTAAGGACTGA

Function

GO: NA

KEGG:

id description
K17404 MRPS25; small subunit ribosomal protein S25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22171 lncRNA downstream 152823 42966356 ~ 42974433 (-) True AMCG00017051
TU22024 lncRNA downstream 575483 42550325 ~ 42551773 (-) True G17754
TU22026 lncRNA downstream 577838 42544360 ~ 42549418 (-) True G17755
TU21787 lncRNA downstream 1188722 41936926 ~ 41938534 (-) True AMCG00017014
TU21724 lncRNA downstream 1521861 41601924 ~ 41605395 (-) True G17505
TU22214 lncRNA upstream 107139 43235805 ~ 43236036 (-) True G17910
TU22218 lncRNA upstream 151571 43280237 ~ 43280863 (-) False AMCG00017061
TU22237 lncRNA upstream 177107 43305773 ~ 43308614 (-) False AMCG00017060
TU22340 lncRNA upstream 504555 43633221 ~ 43633422 (-) True G18015
TU22342 lncRNA upstream 505104 43633770 ~ 43634422 (-) False AMCG00017067
AMCG00017052 mRNA downstream 125324 43000826 ~ 43001932 (-) True AMCG00017052
AMCG00017051 mRNA downstream 152940 42948991 ~ 42974316 (-) False AMCG00017051
AMCG00017050 mRNA downstream 190707 42919702 ~ 42936549 (-) True AMCG00017050
AMCG00017049 mRNA downstream 222210 42856124 ~ 42905046 (-) True AMCG00017049
AMCG00017047 mRNA downstream 306516 42816400 ~ 42820740 (-) True AMCG00017047
AMCG00017062 mRNA upstream 2684 43131350 ~ 43155633 (-) True AMCG00017062
AMCG00017064 mRNA upstream 26973 43155639 ~ 43270969 (-) True AMCG00017064
AMCG00017061 mRNA upstream 151754 43280420 ~ 43286603 (-) True AMCG00017061
AMCG00017058 mRNA upstream 162659 43291325 ~ 43296289 (-) True AMCG00017058
AMCG00017057 mRNA upstream 169278 43297944 ~ 43301808 (-) True AMCG00017057
TU22128 other downstream 262640 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 1910025 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 5068317 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 5068317 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 5368785 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 5360461 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 8302189 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 8316921 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 8316921 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 8727580 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile