RNA id: AMCG00017068


Basic Information

Item Value
RNA id AMCG00017068
length 4849
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00017068
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43806964 ~ 43814318 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGAGCCGGTGACGTCAGCGGCGGGGCTCTGCTGCTCTCGGCGGCCATGAGGAGATCAACGTGACTCCCCGGGAACAGCCCGCTCTCCCGCGGACACATTGCCAAACAGGTGCCGGGGGATGGGCAGCGCGGAATAGCATCGTGCTGCCAGGATCGCAGCGAGATAAGATGTCGGTAAACACTCCCGTCCCCGGGATAAACACTTTGCAAATGCGCAATGCTGCTGGCAGGCGCAGCAGCTCTGAACAGTGCCGTATTAACCGATTATTCACCCAAACAGTGGTCTCATACTCGTACAGGCTTTTTTAACgtacatatttcaaattgaagGTGTATAACGTCATAGATTTTTCAATAAGAcctacccccccccctccgctCACCAAATTCATTATAGATTTATACTTGAATACATGCACATTCGATTACTTATTTCTGACTGTGCCACGATATTTTATGAACTGTTGGTAGTGTGCTGTTCTTGTTCAGAATGCATTGGTAACCTTTAATTGAAGGCTGTTAAAAATGATGAAGCTGAAGTTAGTATTTGCTCCCATTACCCTGTTGGCAGGGGGTGCGATTTGATTTTAGCAGAATGTAAGGCAGAGCATCAGATACTGCTCATATAGATGAAAACCATCGTAAGCAAATCTGTAGCATTGAGACAACTGAACTATAATATAAATTGTGTAGCTGTGTGATATTTTGGTATGCCTATTTAAATGGGAATAGAGCCATAATGTGAATCATGTGTATTGTGGTTGTTGTACTGTATTAGTGCACTGTTTTATTGCTCTCattttgaaagtcgccctggataaaggcacGATACAGAGCGTTTAGTCCATCCCAAATGGTGACATGAGATTTTCACAGAACTGTGGTTACGTAACGTTGGGCATATAAAAATGACGCCTGAAAGacataaatgcaataaatacacacaatgcTGGCTTAGCATACTAGCCTATATTAACCTTAAAAGAGCTGCAGAGCTGGACCCGGTCAATTGGCACGTACGCACGGACTGCTCTTGCGTGGGAATGCAGTCCAGAAGGTTGCGTCACGCAGCCCTGAAGTTCAGTAGTCGTCTGCAGTATATGCTGTGAACCGGTTTTACCCATTGTCATCGAGCACACTACATGTGCAATTGTCTGGATGAAGTTTTATAATAGTAATGTTAGAATGCATTAGGTGCAAAATAAGAGGGGGATCTTAAAGGCGCGCGTCTCTGTATTagctgaatatataaataagcaaattgTAAATTCTCCTTATTTTAATGGCAACAAAGTAATCGCGCACAACAACATGCCTGAAGTGATCGAGTGAAGAATAGTGTTACATACACCGTTCACATTCACACTCAATTAAATGCGTGTTGTCTCTAGAATAATCGATCACAGTTTATCCCAGATAGCAATATTAggttgctacaacgttgtgtgttagctggggtgCACACTAGGGATACATGTATAAAGTTTTGGGCTATACCCGTTAACCAGCtatattgtttcagtttttaaattgcatttcaaatgtactgCATGACTGGGAAGTCCGTAATCTGACTCGCGGGAGCGAATCGGAggtacctgcctaaaacatatTAAGGGTTAGTCTGCCCTATTTTCTGTGTAAAACCTCTTCTGTGccgaagaaagaaaaaaaaaaaccaaaagcCTGCACGTTTCCAGCCTACAGATTGTTGTATGTTGCCTACTAATAGTTTCAAGAGGAGCATGGAAGTACACGGGACCCACATGGTGTGACGAGGGTGTAACGTTGGCTTGCAGATCCTccttaacaagaaaaaaaagcaagagaaGGAGGGTTGTTCTTAGTTCAGATGAAAGCGCTGTCCAACACGTGAGGCTCATGTGACGGAGGCAGGTCAGTGTCGGAGCCGGAGACGTGTCTGCAGTCACAGGGTTTATTTAACACGTAgacccatccatccatccacccaCACGCACGCATTTAACCCAGCCTGCAGCGCCGCACTAGTGCCGACTGCGCTCGGATCTCCGGCTGGCAGCAGCGCGATCGAGCACACAGCAAAAAGGACAATAAGTGCAACATCTGAAGAAAAACTAGAAGACGGGAAATCAGCGTTGACAGCGGcagaacattgttttaaaaaatatatatatatatatttaaaatccatatCCAAGACATTATATAGTCTGTGCTTGGTTCCACAAAATCCTGCTTTCTCGGTATCCTCGGGTCTATTGCTAATTGTTTTTTCGAAAAGAAGGAGCATGGAAAGGATTACAACAGCCCAGCCACCTCCTTGTATGGCAAAACACCCATCGCTGGACATCTCTGAAATGCAAGGAATGGATTTCCCAATGTATGTGTACAAGCCCAGAAGGGGGATCAAACGCGGGGAAGACAGCAAGGAAACTTACAAGTTGCCTCACAGactaattgaaaagaaaaggcGTGACAGAATAAATGAGTGCATTGCTCAACTTAAGGATTTGCTGCCAGAACACCTTAAACTTACTACTTTGGGCCATTTGGAAAAGGCAGTAGTTTTGGAACTCACCCTGAAGCACGTCAAAGCCCTGACAAGCCTCTTGGAACAGCAACAGCAGAAGATAATTGCATTACAGAATGGATTGCAAGTTGgtgACCAGTCCCCTCAGAGCCCTGACACAAATGAGGAAATGTTCCGTTCCGGTTTCCACATGTGTGCCAATGAAGTGCTCCAGTATCTGGCCAACCAGGAGAGTGGGCGAGACCTGACACCGTCGCACATGATCAATCACCTCCACAAGGTAGCATCTGAGGTCCTGCAGAGCTCGCCCAGCCCCCGCACGGAAGAGCCACCCCTCAAAGCACATGACCATAAGGAGAAAGCAGCCAGCTTGCAGCCCAAAAGCTTTGAGGGTCCAGGAAAAAACTGTGTGCCCGTCATTCAGAGGACTTATCCCCAGGGGAGCGGGGAACAGAGCGGCAgtgacacagacactgacagtgGCTATGGTGGCGAGCTGGAGAAAAATGACTCCAAAACAGAGAGTGCGTATTACAGCAAGGAGAGCCAACTGAAGTACACTTTAGCAGAGAGAATGGCAGGCTCCATCAAGCAAGAAAACGATGATCCGCCATCCAAACGGATCAGGACTGAGTCTTCAGAGGATGAGTCCCTCTCTGGTGGAGAGATGTTGGGAAATCATAGCAGTTTTCTTGGCTTTTCTCCACACCAGGCCCCACTCTGCATGCCTTTTTACTTGATCCCACCCTCAGCCGCTGCTTATTTGCCCATGCTGGAGAAATGCTGGTACCCGGGGGCGTTGCCAGTCTTATACCCTGGGCTTTCAGGATCAGCTGCCACAGTCACAGGAGGCCTGAGCCCCGAGAAGCACCAGTCTTCGCTTCTGATGTCCCCCAGAGTAGGCTCCCCTGTGGCGGCTCAGACACCCATGGATTCCCCCGCCCTGCTCCAAGCTTTAAAACAGGTCCCTCCTTTGAACATGGAGTCCAAAGACTGAGAACAATAAAACCCTGTACTCTGAATGTTGGTTAACTACTAAGGAAGGAACAGAACAGCATGAAAGAAGTCCTCCTGGCAGCAGCAGATGTTTTTAGCCCCTTTCCTCCCATGAAAGCACACTGCCGCGCATGGAAGCCAAGTGGCCACCACCTTCTCAGCTTAACgctgagagaaagaaagaggagtCAATGTTAGTGAGGGTTTGTCCACAACGGTGTTGAGACAGCCTGTGAGGCCGCACCAATGAGACATTGTGaagatgatttattttattttatttttaatgaatctgAAGGCCAAAAAAAGTACGTTGGTTTAAATACCGGAAGTTTCCTCTACCCTTCAGTTGAATGTTGAGCAACGTCGAGAATGTGAAATGTGGATAGCCCCTAATTATCAGGACCTGCCCTTTGCAAACACACCATGGTTGAATGTAAAAACCCTGTAGATGCTGCTTTTAAAGCTTTTACATGCTGTAAATGTATTACAGGAGGTTATCTACTACTTGTATCAGCAGCTGCTGAAAAGGAAACAGACCGTCCGTTTGACCgattattacataaaatattaacagtGATGTTCCCCCTACTTCTGCTGTTTGTCTGCTTTAGTGGGCCAGAGCAGTCACTGATAATTGGCAGTTGGGGGATATTCAACTGCGCTACCCCCATCCACCACCCCCCCTTCGCCGCCCCTTCCTCCAAATTacacttgcatttttatttttattttaaagctgaagactatttttgttttttcataccTTGTGTGCAACATCCTTGCAGATGGGGAAGTGGATTTGCACATGTGCAGATTAGTTTTTAGTTTGCAGTTAATTACCATTGTGCAGCAGGTGCTaacctgaaaatgaaatggtaaTGCAATctcttgtaattattttgtttatattatgtgTACATCTCTATTTTTGATACAAGTCCCACTGACATTACCATTATGACTAGAAGGCGTTTTAGTTGTTcaacaaaacatgtacataGCACTGTGCTAGCCCTGATTTGCatactttttaatattcatttctGGTCAAGTTAAACCTGTTCTTTGTTCATGCTGTTGCCTTTACTTGTTGAAGCTGATAAACTGATATCAGAtgttcattaaatgtatttgtataaatactGGAGTacagtaaagaaagaaaagtgaatgtaatgttttaaacagAAGATTAGTTTTGTATAGAAAGAGGTActtgagatttttattttgggacCTACAAGAAGGTTGTCTGATGTACATATTTTGTCTATAAAGTAAATGttgatatacattatataaacgtattaataaagtatttttttttcatgtggaa

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03729 BHLHB2, DEC1; class B basic helix-loop-helix protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22305 lncRNA upstream 306488 43500170 ~ 43500476 (+) True G17987
TU22306 lncRNA upstream 336118 43470070 ~ 43470846 (+) True G17988
TU22284 lncRNA upstream 412465 43394293 ~ 43394499 (+) True G17969
TU22213 lncRNA upstream 570928 43235820 ~ 43236036 (+) True G17909
TU22180 lncRNA upstream 694328 43053086 ~ 43112636 (+) True G17882
TU22414 lncRNA downstream 287708 44102026 ~ 44103399 (+) True G18077
TU22423 lncRNA downstream 302648 44116966 ~ 44201038 (+) True G18084
TU22469 lncRNA downstream 562675 44376993 ~ 44377228 (+) True G18125
TU22471 lncRNA downstream 573125 44387443 ~ 44387949 (+) True G18127
TU22536 lncRNA downstream 809049 44623367 ~ 44667457 (+) False G18186
AMCG00017071 mRNA upstream 11394 43781424 ~ 43795570 (+) True AMCG00017071
AMCG00017072 mRNA upstream 33512 43768858 ~ 43773452 (+) True AMCG00017072
AMCG00017073 mRNA upstream 75405 43688060 ~ 43731559 (+) True AMCG00017073
AMCG00017076 mRNA upstream 260160 43544654 ~ 43546804 (+) True AMCG00017076
AMCG00017065 mRNA upstream 422115 43371658 ~ 43384849 (+) True AMCG00017065
AMCG00017069 mRNA downstream 11011 43825329 ~ 43841590 (+) True AMCG00017069
AMCG00017070 mRNA downstream 29096 43843414 ~ 43855324 (+) True AMCG00017070
AMCG00017078 mRNA downstream 311896 44126214 ~ 44137931 (+) True AMCG00017078
AMCG00017079 mRNA downstream 332394 44146712 ~ 44160471 (+) True AMCG00017079
AMCG00017080 mRNA downstream 550288 44364606 ~ 44371508 (+) True AMCG00017080
TU21955 other upstream 1409177 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 5303332 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 9706101 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 9759244 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 10134344 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 311896 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 840334 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 5588401 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 5899206 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 6737562 50551880 ~ 50552985 (+) True G19113

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008126 True 2804 mRNA 0.48 5 NC_007122.7 35759652 ~ 35763323 (-)
grasscarp (Ctenopharyngodon idella) CI01000306_08699884_08701812.mRNA False 4088 mRNA 0.46 4 CI01000306 8698569 ~ 8703451 (-)
tiger barb (Puntius tetrazona) TU119073 True 644 lncRNA 0.45 2 NC_056709.1 10321670 ~ 10322338 (+)