RNA id: AMCG00017070


Basic Information

Item Value
RNA id AMCG00017070
length 3737
RNA type mRNA
GC content 0.40
exon number 11
gene id AMCG00017070
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43843414 ~ 43855324 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caGGAACAGTGTGAGACAATCGTGGGGTCAAGGGGGAAGCGCAGCGACAcaactttttgtttcttttaaaaccaGTTAAATCGGTGAATTATGATTTTACAGGCCGGGCCAGAGCAAACATGCAATGGAGGTCGATAGTACTTGGTCTGCTCTTGTTGAGACTGGCCCTAAGCTGTGTACTGTGGTTCGCGTTTGGATTGGGACCTAGCTGGGGGTTTTATCAGAACTTCCccatacatttcaatttcaattcgcAGAAAGTGGACACTTTCAAAGACGGCGAGACAGCGGAATCTCGGACTGTGTGGCTGAAGCAGCAACATGGGATCGGATGTGAAAGTAAAGGGACGTGTCCGAAGAGCAGTGACAATGCACAGAAAACCCCCTATAATGTATTTAAGGGCAGCGGGGACGATTACGCCAAAAAATACAGTTCCTTCCCACAGCCACTGAAGGCGAAGATGAAGGGTATGGCCAaggagatgttttattttgggtaTGACAATTACATGAAATACGCGTTTCCCGAAGACGAGCTCAACCCAATAGACTGCGAGGGTAGAGGACCCGACGTGCTTGACCCGTCCAACATCAATATCAACGATGTCTTGGGGAACTACTCTTTGACACTTATTGATACGCTTGATACATTGTTGGTAATGGGGAATGTTTCTGAGTTCCATAGAGCAGTGAAGCTTGTGATTGATACTGTCTCATTTGATAAAGATTCAACCGTGCAAGTGTTTGAAGCTAATATAAGGATTCTTGGCAGCCTGATCTCTGCACACATCCTCCTGACTGATGCCAAACAGCCATTCGGAAACGTGGGACTTGAGGATTATGACAACGAGCTCCTGCACCTTGCTCATGATCTCGCAGTCCGGCTCCTGCCAGCGTTTGAGAATACCAGCACAGGGATCCCCTATCCACGGGTCAACCTGAAGAATGGAGTTCCTCCCAACAGCATCAATGAGACTTGCACAGCTGGCGCTGGATCCTTATTGGTGGAGTTTGGGATTCTCAGCCGCCTGCTTGGCGACTCAACTTTCGAGTGGGTGGCCAGAAGGGCAGTCAAAGCTCTCTGGGACCTCAGAAGCAACGAGACAGGCCTGCTAGGCAATGTGATTAACATCCAGACTGGTCAGTGGGTTAGCAAGCAGAGTGGGCTAGGAGCTGGCATGGACTCCTTCTACGAGTATCTGCTCAAGTCTTACATTCTGTTTGGAGACAAAGAAGACTACAAGATGTTTAAAGCTGCTTATGAGAGTATTCAAAACCATCTGAGAAGAGGGCGGGAATCGTGCAATGAAGGAGAGGGGGATCCTCCACTGTATGTCAATGTGAACATGTTTAATGGACAGATAATGAACACCTGGATAGACTCTCTTCAGGCCTTTTTCCCAGGTCTACAGGTGTTAAACGGAGATGTAGAAAATGCAATTTGCCTACATGCCTTTTATTACGCGATATGGAAGCGCTTTGGTGCCCTGCCAGAGAGGTACAACTGGCAGCTGCAGGCACCAGATGTCCTCTTCTATCCACTAAGACCCGAATTGGTGGAGTCAACCTATCTGCTATATCAGGCCACCAAGAATCCTTTTTACCTGCATGTAGGAATGGACATCCTGCAAAGCCTTGAAAAGTATACCAAAGTCAGATGTGGGTATGCCACACTTCATCACGTGGTGGACAAGTCCAAAGAGGATCGGATGGAGAGCTTTTTTCTCAGCGAGACGTGCAAATACTTGTTTCTGTGTGACAGGATTCCAGATGAGCGGCGGTACGCGTTGCCTTTGAAAAGCGTTTACATGAGGCAGATCGATCATATGGTGGGACTGCTCTGAGGACCTCCTCCTCGGGCGCTAGCTTACTGGGATGCTACTGTGGCCAAGGGGTGCTTTGACTCTGCAGGCAGGTCTGGGAGGAGGCCTGTACTAACACTAGTGCTGTGGGGGGAGAGGGGAATGACACCGCACCTCCCTGAAACTGAGGAATGTTTAAGGTATTCAAAAAACGGGTTTCCaatacagtttttcttttcttttttttttttttgagtagtAAAGAGGTGaaggcttttttttaatatcactaTAGTCAAGGTTATTTACAGAACATCACTTTTTGTGgaaaatttaaatttgtaagAATAAGCTTACAATTTATTATtcatcattaattaattattcattatgtCTGTTGTTTCTGTCGAACATAATgaatattctgttttttatttttctagaatTAACCTTACAGTATGCAACCTTTTATTTATGTCCCTTTTCTCTATGAAAGccatatattaaatgtatgttggTAAAGATCATACCTGGTGAGGCATTACCATCCTAGCCTCCAATGGCAAGGTCATTCTTAAGTAAGTTGTCGGGAATGGTTTGCATAGTGCAAAATAGGTTGTCAATCTGATTTTACTGAACAATAGAACTTCACTTCAATATCATGATTTGCAGTCAAAATACTTTGACGCCTTTTTGTTTATGTCATAGTGTTAAAGAAGCAGTTTAAgttactgttttaattgaacatttccacttttattattgtactgGAACAGTAGTCTTAAAGTGCAATGCTTTAAACAACTAAAGAACTACTTTTTCCATTTGTCTTCCATTTTCACCTCAGAAATGTAAAGGTGTTCATGGGCTTCCACTGACCtttcattatttgaattattgctTCCGTTTGATATTTCTCTCAAAGAAGGAAAGATCATGAACGGCATTTTATATGCTAAATCTTTCAGACTGGTGATGTTGACTTAATatgagaataaaatgcattgtattgaatatttaattaattgtattcactTCTCTCTCGGGATTTGCAGCCTACATTTGCACAGATTGCTTGATGACACTGCACATGTATTGGGCAAAAAGTAAGAAACCGACATGGTTGTTCTTTTAGAAAGCTGAGGCTCTTAAGATGAGTGTGACTGTAATGTAGATGATTTATCTGACTTTtttgaaaacacattgttttatatgaGCATCTCAGGAATTACTTGAGAATTATCATTTAGGTTATTAACTTGTGAAATGGTGTCAGTATTTGGTTTTAAATTCCTGAAGTGGTAGGCCTCATATATTAAACTGAACTAGAACATTATTGAAggcaagattattattattttttccaatcttAGTGACATACTAGATACACATAGGTGTTTCATAATACAGAAGTGCAATGTAggttccttaaaaaaaacagtttttaaattagtattaggaataaaatatatattttgtctacTTCTGTTATTTTACAAGTCTGTGTTTCAGTGATATGAAGGCTGATCTGATGACAAAGTTAAGTCAGTGGTGCACAGAAACCTATTTTTTGCACCTTAATCCAGGCAGGTCTAAAGACTAGATTTTTTAATTGAGAGCAGTTTTTATAGTTGCTGCAGGGTAACACAGTTCAGTGCCATAGAAGTTGATCTGCAGATTTgaggctttacattttttttaaatcataattcttatttttttaacttgtttatAATTGAGTATTTGTTCAAGATGGGGGAACAAAATTATGTCTCTAAAGAGTAATTTTTACTTCTAGTGCTTCTATGTAAAATCTTGAATACCAACAAACTGGCCTTAACTTTCTCTGTGCGATCCTTGGGTGTactgtggatatatatatatatataatatatatatatataatgtttgtgtacagtatatgtaagaTCTGGG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K10084 EDEM1; ER degradation enhancer, mannosidase alpha-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22305 lncRNA upstream 342938 43500170 ~ 43500476 (+) True G17987
TU22306 lncRNA upstream 372568 43470070 ~ 43470846 (+) True G17988
TU22284 lncRNA upstream 448915 43394293 ~ 43394499 (+) True G17969
TU22213 lncRNA upstream 607378 43235820 ~ 43236036 (+) True G17909
TU22180 lncRNA upstream 730778 43053086 ~ 43112636 (+) True G17882
TU22414 lncRNA downstream 246702 44102026 ~ 44103399 (+) True G18077
TU22423 lncRNA downstream 261642 44116966 ~ 44201038 (+) True G18084
TU22469 lncRNA downstream 521669 44376993 ~ 44377228 (+) True G18125
TU22471 lncRNA downstream 532119 44387443 ~ 44387949 (+) True G18127
TU22536 lncRNA downstream 768043 44623367 ~ 44667457 (+) False G18186
AMCG00017069 mRNA upstream 1824 43825329 ~ 43841590 (+) True AMCG00017069
AMCG00017068 mRNA upstream 29096 43806964 ~ 43814318 (+) True AMCG00017068
AMCG00017071 mRNA upstream 47844 43781424 ~ 43795570 (+) True AMCG00017071
AMCG00017072 mRNA upstream 69962 43768858 ~ 43773452 (+) True AMCG00017072
AMCG00017073 mRNA upstream 111855 43688060 ~ 43731559 (+) True AMCG00017073
AMCG00017078 mRNA downstream 270890 44126214 ~ 44137931 (+) True AMCG00017078
AMCG00017079 mRNA downstream 291388 44146712 ~ 44160471 (+) True AMCG00017079
AMCG00017080 mRNA downstream 509282 44364606 ~ 44371508 (+) True AMCG00017080
AMCG00017081 mRNA downstream 517564 44372888 ~ 44385986 (+) True AMCG00017081
AMCG00017082 mRNA downstream 533588 44388912 ~ 44411339 (+) True AMCG00017082
TU21955 other upstream 1445627 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 5339782 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 9742551 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 9795694 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 10170794 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 270890 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 799328 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 5547395 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 5858200 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 6696556 50551880 ~ 50552985 (+) True G19113

Expression Profile