RNA id: AMCG00017072


Basic Information

Item Value
RNA id AMCG00017072
length 423
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00017072
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43768858 ~ 43773452 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCTCGCCACAATAAGGAGCTGCAGAACATGCTGAAGCCTGGGGGACTGAATGGAGAAGGAGATGAGGCCCTGGAGTTCTATGCCAAACACACGGCCCAGATTGAGATTGTGCGGCATGATCGCACCATGGAGCAAATTGTCTTCCCCGTACCCAACATCTGCGAGTTCCTCACCAACGAATCCAAGCTGAGGGTTTACTATACTACCGAGAGGGACGAGCAAGGCAGCAAGATCAATGACTTCTTCCTCCGGTCAGAAGACCTCTTTAACGAGATGAATTGGCAGAAGAAGCTGCGAGCTCAGCCTGTGTTGTATTGGTGCTCTCGCAACATGTCCTTCTGGAGCAGCATCTCCTTCAACCTGGCTGTGCTCATGAACCTGCTGGTGGCTTTCTTCTATCCCCTGGAGGGCATCCGGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22305 lncRNA upstream 268382 43500170 ~ 43500476 (+) True G17987
TU22306 lncRNA upstream 298012 43470070 ~ 43470846 (+) True G17988
TU22284 lncRNA upstream 374359 43394293 ~ 43394499 (+) True G17969
TU22213 lncRNA upstream 532822 43235820 ~ 43236036 (+) True G17909
TU22180 lncRNA upstream 656222 43053086 ~ 43112636 (+) True G17882
TU22414 lncRNA downstream 328574 44102026 ~ 44103399 (+) True G18077
TU22423 lncRNA downstream 343514 44116966 ~ 44201038 (+) True G18084
TU22469 lncRNA downstream 603541 44376993 ~ 44377228 (+) True G18125
TU22471 lncRNA downstream 613991 44387443 ~ 44387949 (+) True G18127
TU22536 lncRNA downstream 849915 44623367 ~ 44667457 (+) False G18186
AMCG00017073 mRNA upstream 37299 43688060 ~ 43731559 (+) True AMCG00017073
AMCG00017076 mRNA upstream 222054 43544654 ~ 43546804 (+) True AMCG00017076
AMCG00017065 mRNA upstream 384009 43371658 ~ 43384849 (+) True AMCG00017065
AMCG00017066 mRNA upstream 399475 43365827 ~ 43369383 (+) True AMCG00017066
AMCG00017055 mRNA upstream 449545 43317690 ~ 43319313 (+) True AMCG00017055
AMCG00017071 mRNA downstream 7972 43781424 ~ 43795570 (+) True AMCG00017071
AMCG00017068 mRNA downstream 33512 43806964 ~ 43814318 (+) True AMCG00017068
AMCG00017069 mRNA downstream 51877 43825329 ~ 43841590 (+) True AMCG00017069
AMCG00017070 mRNA downstream 69962 43843414 ~ 43855324 (+) True AMCG00017070
AMCG00017078 mRNA downstream 352762 44126214 ~ 44137931 (+) True AMCG00017078
TU21955 other upstream 1371071 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 5265226 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 9667995 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 9721138 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 10096238 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 352762 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 881200 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 5629267 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 5940072 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 6778428 50551880 ~ 50552985 (+) True G19113

Expression Profile