RNA id: AMCG00017073


Basic Information

Item Value
RNA id AMCG00017073
length 4745
RNA type mRNA
GC content 0.51
exon number 33
gene id AMCG00017073
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43688060 ~ 43731559 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGCCTTTTCAAACTATGTCCTATGAACAGGTATTCTGCACAGAAGCAGTTCTGGAAAGCTGCAAAACCAGGAGGGAACACTACAACGGatacagtgcttttaaataaattgcatTTGTTACACCTGAAAAGCAATAAGTATCTGACAGTTAATAAGCGCCTCCCTGCACTGCTGGAGAAGAATGCGATGCGAGTGACTCTGGATGCTGCCGGAAATGAGGGCTCCTGGTTTTACATCCAACCCTTCTACAAACTGCGCTCGATTGGAGACAGTGTGGTGATTGGAGACAAGGTGGTTTTGAATCCTGTCAATGCAGGACAGCCACTGCATGCCAGCAGTCATCAGCTGGTAGACAACCCAGGCTGCAATGAGGTTAACTCTGTAAACTGCAATACAAGCTGGAAGATCGTTCTGTTTATGAAATGGAGTGACAACAAAGAGATTATATTGAAAGGGGGGGATGTAGTGCGGCTGTTTCATGCGGAGCAGGAGAAGTTCCTGACATGTGATGATCACCGCAAGAAGCAGTACGTGTTCCTCAGGACCACCGGCCGCCAGTCTGCTACCTCGGCAACCAGCTCCAAAGCTCTGTGGGAGGTGGAGGTTGTCCAGCATGACCCATGCAGAGGTGGTGCTGGTTACTGGAACAGTCTGTTCAGGTTTAAGCACCTAGCCACTGGACACTATCTGGCTGCAGAGATGGACTCGGAGCAGGAGGCTCTCCGGGCACGGCTACGCACGGCCCAGGAGAAGGTCATGTATACCCTGGTGTCTGTGCCTGATGGAAACGACATCTCCTCCATCTTTGAGCTGGACCCCACTACGCTGAGAGGAGGAGACTCGCTTGTGCCCAGGAACTCGTACGTAAGACTGAGACATCTCTGTACTAACACATGGGTTCACAGTACCAACAACCCCATAGATAAGGATGAGGAGAAGCCCGTAATGCTTCGTATCGGCACATCTCCACTAAAAGAAGATAAAGAAGCCTTTGCCATTGTCCCAGTTTCCCCGGCTGAGGTGCGAGACCTAGACTTTGCAAACGATGCTAGCAAAGTGTTGGCCTCTATTGCTGGCAAACTTGAGAAGGGAACCATAACCCAGAATGAGAGGAGGTTTGTAACCAAGCTGTTGGAGGATTTGGTATTCTTTGTTGTGGACATTCCAAACAATGGCCAAGATGTTCTTGAGATAATGGTCAATAAGCCCAACAGGGAACGTCAGAAACTGATGAGAGAGCAAAACATCTTGAAACAGATCTTCAAGCTGCTGCAGGCACCCTTCACCGACAGCGGGGATGGGCCCATGCTGAGGCTGGAGGAGCTGGCAGACCAGCGGCATGCCCCCTTCAGGCACATCTGCAGACTGTGCTACAGAGTGCTGCGCCACTCCCAGCAGGACTACAGGAAGAACCAGGAATATATTGCGAAGCAGTTCCGCTTCATGCAGAAGCAAATTGGATACGATGTTCTGGCTGAAGACACGATAACGGCTTTGCTCCACAACAACCGCAAACTTCTGGAAAAGCACATAACCGCGGCAGAGATTGACACCTTCGTCAGTTTAGTACGAAAGAACAGGGAAcccagGTTTCTGGATTACTTGTCTGACCTGTGCGTGTCTATGAACAAATCGATTCCTGTGACCCAGGAGCTCATCTGTAATGCAGTGCTGGACCCCAACAATGCAGATATTCTCATTGAGACAAAGCTGGTGCTTTCCCGGTTTGAGATTGAGGGTATACCTATTGGAGAGAGCCCCGTGGAGTCtgaggaggatgaggaagaaGTGTGGCTCTTCTGGAAGGACAGTAACAAGGAAATCCGCAGCAAGAGCATCCGTGAGCTGGCCCAGGACGCCAAGGAGGGGCAAAAGGAGGACCAGGAGGTGGTCAGCTACTACAGGTCAGCCGCTTTTAATTCGCAGAGCCAGCTGGATGTTGACCTTATCCTGCGCTGTATGTCGGATGAGGATCTGCCCTATGACCTGCGAGCATCCTTCTGCCGCATGATGCTGCACATGCATGTGGACCGTGACCCCCAGGAACAGGTCACCCCAGTGAAGTACGCCCGTCTGTGGTCAGAGATCCCTTCCAAAATCGCCATTGACGATTATGACAACAACGGAACCTCAAAGGATGAAATCAAGGAGAGGTTTGCTCAGACAATGGAGTTTGTGGAGAATTATTTGAGAGATGTGGTTTGTCAGAACTTCCCCTTTTCGgataaggaaaaaaataaactcaccTTCGAGgttGTAAATTTAGCCAGAAACCTAATTTACTTTGGCTTCTACAACTTTAGTGATCTTTTGAGATTGACTAAAATACTGTTGGCCATATTGGACTGCGTACATGTCAGTACAATCTTTCCAATCAACAAGCTGGAAAAAGGAGATGAAGCCAAAGGGAGCAATGTCATGAGGTCAATCCATGGGGTAGGGGAGTTGATGACTCAGGTGGTCCTGAGAGGAGGGGGTTTTCTTCCCATGACCCCCAGTAACCCCCCGGATGGTGGTGATGCCAAGACGCAGACTGAGCCAGAGAAAGAAGACATCTTAGTAATGGACACCAAGCTGAAGATCATAGAAATCTTGCAGTTCATCTTAAACGTAAGGCTAGACTACAGGATCTCATGCCTCCTTTGCATCTTTAAGCGGGAGTTTGATGAGAGCAACTCCCAGACAGACATTTCAAGCACCATTCAGGATGGACTCAACAGTATGCCAGGTGCTCTTGATTTTGAACACATTGAGGAGCAGGCTGAGGGGATTTTTGGTGGAAGTGAGGAGAATACACCTTTGGACCTGGACGACCATGGTGGAAGAACCTTTCTGCGCGTCCTGCTGCACCTCACTATGCATGATTATCCACCCCTGGTGTCTGGCGCTCTGCACCTGCTCTTTAGACACTTCAGTCAGAGACAGGAGGTCCTGCAGGCCTTTAAACAGGTTCAACTACTGGTCACGAGCCAAGATGTGGACAACTACAAGCAGATCAAGTCTGACCTGGACCAGCTGCGCTCCATCGTGGAGAAGTCAGAGCTGTGGGTGTACAAGCGGCAGGGGCCCGATGAGGGTATGGACACTGGAGATGGCCCTCCCGGCGATTCAGAGCACAAGACAAAGGGTGACTCAAACGCAAGTGGTTCAGATAAAACCAAGAAACCCGAAAGCACCAGCAGCTACAACTACAGAGTGGTCAGAGAGATTCTGATCCGGCTCAGTAGGTTGTGTGTCCAGGAGGGTTCGTCGGGCAGGAAGAGTaggaagcagcagcagaggCTGCTGAGGAACATGGGAGCTCACACAGtggtgctggagctgctgcagatcCCGTACGAGAAGGGGGAAGACGTCCGCATGCAAGAGATCATGAAACTGGCTCACGAGTTTCTGCAGAACTTCTGTGCTGGGAATCAACAGAACCAGGCGCTACTTCACAAACACATTAACCTCTTTCTCAACCCAGGGATTCTGGAGGCCGTGACCATGCAGCACATCTTCATGAATAACTTCCAGCTCTGCAGCGAGATCAACGAGCGAGTGGTACAGCACTTCGTCCACTGCATTGAGACCCACGGCCGCAACGTTCAGTACCTCAAGTTCCTGCAGACCATCGTCAAGGCAGAGGGGAAGTTCATCAAAAAGTGCCAAGATATAGTCATGGCTGAGCTGGTGAATGCGGGTGAGGATGTCCTGGTCTTCTACAATGACCGCGCCTCCTTCCAGACATTGGTGCAGATGATGCGCTCAGAGAGGGACCGCATGGATGAGAACAGCCCCCTGATGTACCACATTCACCTGGTGGAGCTACTGGCTGTCTGCACTGAGGGCAAGAACGTCTATACCGAGATAAAGTGCAACTCCCTGCTCCCTCTGGATGACATTGTCAGGGTGGTGACGCATGAGGACTGCATTCCTGAAGTGAAAATCGCATACATCAACTTTCTGAATCACTGCTATGTAGACACAGAGGTGGAAATGAAGGAAATCTATACCAGTAATCACATGTGGAAACTTTTTGAGAACTTCTTGGTTGACATATGCAGGGTTTGTAACAATACGAGTGACCGGAAGCATGCTGACACCATACTGGAGCGCTATGTGACTGAGACTGTGATGAGCATCGTCACCACATTCTTCAGCTCTCCTTTCTCTGACCAGAGCACCAGCTTACAGacCCGGCAGCCAGTGTTCGTGCAGCTCCTGCAAGGTGTCTTCAGGGTTTACCACTGTAACTGGCTCATTCCAGTGCAGAAGGGGTCAGTAGAGAGCTGTATCAAAGTGCTCTCTGACGTAGCAAAAAGTCGAGCTATAGCCATCCCTGTGGATCTGGACAGCCAAGTGAATAACCTCTTCTTGAAATCTCACAACATTGTGCAGAAGACAGCCATGAGTTGGCGAATGTCTGCCCGCAATGCGGCGCGGAGGGACTCAGTGCTGGCCGCCTCCCGGGACTACAGGAACATCATAGAGAGGCTGCAGGACATTGTTTCTGCGCTGGAGGACCGGCTGCGGCCCCTGGTCCAGGCCGAACTGTCTGTGCTGGTGGATGTCCTGCACAGACCCGAGCTGCTTTTTCCCGAGAACACTGACGCCAGGAGGAAGTGTGAGAGTGGCGGCTTTATCTGCAAaCTGATAAAGCACACCAAACAGCTGCTGGAGGAGAATGAAGAAAGGCTGTGTATTAAAGTGCTGCAGACGCTGAGAGAGATGATGACTAAAGACCGAGGCTATGGGGAG

Function

GO: NA

KEGG:

id description
K04958 ITPR1; inositol 1,4,5-triphosphate receptor type 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22305 lncRNA upstream 187584 43500170 ~ 43500476 (+) True G17987
TU22306 lncRNA upstream 217214 43470070 ~ 43470846 (+) True G17988
TU22284 lncRNA upstream 293561 43394293 ~ 43394499 (+) True G17969
TU22213 lncRNA upstream 452024 43235820 ~ 43236036 (+) True G17909
TU22180 lncRNA upstream 575424 43053086 ~ 43112636 (+) True G17882
TU22414 lncRNA downstream 370467 44102026 ~ 44103399 (+) True G18077
TU22423 lncRNA downstream 385407 44116966 ~ 44201038 (+) True G18084
TU22469 lncRNA downstream 645434 44376993 ~ 44377228 (+) True G18125
TU22471 lncRNA downstream 655884 44387443 ~ 44387949 (+) True G18127
TU22536 lncRNA downstream 891808 44623367 ~ 44667457 (+) False G18186
AMCG00017076 mRNA upstream 141256 43544654 ~ 43546804 (+) True AMCG00017076
AMCG00017065 mRNA upstream 303211 43371658 ~ 43384849 (+) True AMCG00017065
AMCG00017066 mRNA upstream 318677 43365827 ~ 43369383 (+) True AMCG00017066
AMCG00017055 mRNA upstream 368747 43317690 ~ 43319313 (+) True AMCG00017055
AMCG00017056 mRNA upstream 373109 43308695 ~ 43314951 (+) True AMCG00017056
AMCG00017072 mRNA downstream 37299 43768858 ~ 43773452 (+) True AMCG00017072
AMCG00017071 mRNA downstream 49865 43781424 ~ 43795570 (+) True AMCG00017071
AMCG00017068 mRNA downstream 75405 43806964 ~ 43814318 (+) True AMCG00017068
AMCG00017069 mRNA downstream 93770 43825329 ~ 43841590 (+) True AMCG00017069
AMCG00017070 mRNA downstream 111855 43843414 ~ 43855324 (+) True AMCG00017070
TU21955 other upstream 1290273 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 5184428 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 9587197 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 9640340 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 10015440 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 394655 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 923093 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 5671160 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 5981965 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 6820321 50551880 ~ 50552985 (+) True G19113

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008127 False 9633 mRNA 0.49 62 NC_007122.7 35777329 ~ 36020005 (-)
grasscarp (Ctenopharyngodon idella) CI01000306_08710919_08824478.mRNA True 10761 mRNA 0.47 69 CI01000306 8709604 ~ 8824478 (-)