RNA id: AMCG00017076


Basic Information

Item Value
RNA id AMCG00017076
length 2151
RNA type mRNA
GC content 0.48
exon number 1
gene id AMCG00017076
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43544654 ~ 43546804 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTAGTAGGGTGTTTTCCTCAGTACCCTGTCGGGCATTTATCGGACTGCTGCTAGTCACAGGGGCTGTTTCTTCAGCGCAGAGCAGTGAGTGTCCCCagttgtgcgtgtgtgagatCAGGCCTTGGTTCACTCCTCAGTCCACGTACAGGGAAGCCACAACTGTGGATTGCAATGACCTGCGACTCACCCGTATCCCCAGCAACCTCTCCAGTGACACCCAGGTCCTCCTGCTCCAAAGTAACTACATTGCCAAAACCACAGATGAACTGGAGCAGCTCTTTAACTTGACCGAGCTGGACCTGTCCCAGAATAACTTCAGCAGCATCAAAGACGTTGGCCTGACGAACCTTTCCCAGCTCACTACTCTTCATCTGGAGGAAAACCAAATCACAGAAATGCCTGATTACTGTCTGCAGGACCTAAGCAACTTGCAAGAACTGTATATCAACCACAACCAAATCAACAGCATATCAGCCAATGCCTTCTCTGGACTACGTAACCTGCTGAGGCTTCATCTGAACTCCAACAAGTTAAAGGTTATCGACAGCCGTTGGTTTGAATCTACTCCAAACCTTGAGATACTTATGATAGGGGAAAATCCTGTCATTGGTATTCTGGACTTGAATTTTAAGCCATTGGCTAACCTGCGGAGCCTGGTTCTAGCTGGGATGGACTTGACGGATATTCCTGGAAATGCCCTGGTGGGACTTGACAACCTGGAAAGTCTCTCGTTTTATGATAACAAGCTGGTAAGAGTTCCTCAGCGTGCATTGCAGAAAGTTCCTAACTTGAAATTCCTTGATTTGAATAAAAACCCTGTGCACAAGATTCAAGAAGGAGACTTTAGAAATATGCTGCGCTTGAAAGAGCTTGGGGTGAACAACATGGCCGAGCTGGTTTCCATAGATCGATATGCACTGGATAACCTTCCGGAGCTAACGAAGCTCGAAGCCACAAACAACCCCAAACTATCCTATATCAATCGTTTAGCTTTCCGGGATGTACCATCTCTGGAGAGTCTTATGCTCAACAATAATGCGTTGAATGCTCTGTATCAGAAAACCATGGAGTCCCTTCCTAACCTCCGTGAAATCAGCATTCATAGCAACCCACTAAGGTGTGACTGTGTCATCCAGTGGATGAACTCCAACAAGACCAACATCCGATTCATGGAGCCCCTGTCAATGTTTTGTGCCATGCCGCCTGAGTACCGAGGACAGCATGTGAAAGAAGTCCTGATGCAGGACTCGTCTGAGCAGTGTCTTCCAATGATCTCCCATGACACTTTCCCAAATCACCTGAACTTGGACATCGGGATGACGGTGAACTTGGATTGCCGCGCCATGGCGGAGCCGGAACCCGAAATCTACTGGGTCACCCCActtggaaataaaataacagtagaTACCTTATCTGACAAATACCACCTCAGTAGTGAGGGAACCCTGAAGATCTCCCACATTCAGGTGGAGGACTCTGGCCGATACACTTGTGTCGCACAGAATACCGAAGGCGCAGATACCAGGGTATCTACAATCCGAGTGAATGGCACCCTGCTGGACAGCACCCAGGTCATGAAAATCTACGTCAAACAAACTGAGTCCCACTCCATTTTGGTGTCCTGGAAAGTTAACTCCAATGTTATGACATCCAACCTGAAGTGGTCTTCAGCCACCATGAAGATCGATAACCCACATATAACCTACACGGCCAGAGTACCAGTCGATGTGCACGAATACAACCTGACCCACCTTCAACCCTCCACAGAGTATGAGGTGTGCCTTACTGTGTCCAACATCCATCAGCAGACTCAGAAGTCGTGTGTGAATGTCACCACCAAGAATGCTGCTTTTGCATTAGACATTTCAGATGAAGGAACCAGCACTGCTCTGGCGGCCGTGATGGGAACAATGTTTGCCATCATTAGCTTGGCTTCCATTGCAGTGTACATTGCCAAAAGGCTGAAGCGGAAGAACTACCACCACTCCTTAAAGAAGTACATGCAGAAAACATCTTCAATCCCACTGAATGAGCTCTACCCCCCTCTCATCAATCTCTGGGAGGGCGACAGCGAAAAGGACAAAGAGGGATCTTCAGAAACAAAGCCCACCCAAGTTGACACAACAAGAAGCTACTACATGTGGTAA

Function

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22305 lncRNA upstream 44178 43500170 ~ 43500476 (+) True G17987
TU22306 lncRNA upstream 73808 43470070 ~ 43470846 (+) True G17988
TU22284 lncRNA upstream 150155 43394293 ~ 43394499 (+) True G17969
TU22213 lncRNA upstream 308618 43235820 ~ 43236036 (+) True G17909
TU22180 lncRNA upstream 432018 43053086 ~ 43112636 (+) True G17882
TU22414 lncRNA downstream 555222 44102026 ~ 44103399 (+) True G18077
TU22423 lncRNA downstream 570162 44116966 ~ 44201038 (+) True G18084
TU22469 lncRNA downstream 830189 44376993 ~ 44377228 (+) True G18125
TU22471 lncRNA downstream 840639 44387443 ~ 44387949 (+) True G18127
TU22536 lncRNA downstream 1076563 44623367 ~ 44667457 (+) False G18186
AMCG00017065 mRNA upstream 159805 43371658 ~ 43384849 (+) True AMCG00017065
AMCG00017066 mRNA upstream 175271 43365827 ~ 43369383 (+) True AMCG00017066
AMCG00017055 mRNA upstream 225341 43317690 ~ 43319313 (+) True AMCG00017055
AMCG00017056 mRNA upstream 229703 43308695 ~ 43314951 (+) True AMCG00017056
AMCG00017054 mRNA upstream 420251 43118218 ~ 43124403 (+) True AMCG00017054
AMCG00017073 mRNA downstream 141256 43688060 ~ 43731559 (+) True AMCG00017073
AMCG00017072 mRNA downstream 222054 43768858 ~ 43773452 (+) True AMCG00017072
AMCG00017071 mRNA downstream 234620 43781424 ~ 43795570 (+) True AMCG00017071
AMCG00017068 mRNA downstream 260160 43806964 ~ 43814318 (+) True AMCG00017068
AMCG00017069 mRNA downstream 278525 43825329 ~ 43841590 (+) True AMCG00017069
TU21955 other upstream 1146867 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 5041022 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 9443791 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 9496934 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 9872034 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 579410 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 1107848 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 5855915 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 6166720 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 7005076 50551880 ~ 50552985 (+) True G19113

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_11005204_11007357.mRNA True 2997 mRNA 0.43 1 CI01000340 11004438 ~ 11007434 (-)