RNA id: TU22431



Basic Information


Item Value
RNA id TU22431
length 376
RNA type TUCP
GC content 0.51
exon number 3
gene id AMCG00017078
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44126214 ~ 44137931 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGCAGTGACCCTTGTGACAGATCCACTGTTTTTACAGCTAGGAGAAAATAATCAGAAGATGTACTTTCGTTTGGATCAATGCAAGgACCTTTTCTGTGGAGACTAACTGAATGTAGCTGATTGCCAGCATGGCAGCGGATGTCCACAATAAGAAGGTGGTGTGGGAGATACAGAATGGCAGCCTGGCTCCAGTGGACAAACTCCGCAACGAGAGATCAGATAGCCCCACTCCAGGACTGGTGGAGGGAACAGAACCAGGGGCTGGGCAAGACAATGCCATGTTTGTCCACACACGCTCTTTTGAAGACCTCACAGCCGATAATGAGGAAGCAGGGGGTGTGGAGACAGCCTCTGAGCTGAGTGCACAATTGGAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU22414 lncRNA upstream 22815 44102026 ~ 44103399 (+) True G18077
TU22305 lncRNA upstream 625738 43500170 ~ 43500476 (+) True G17987
TU22306 lncRNA upstream 655368 43470070 ~ 43470846 (+) True G17988
TU22284 lncRNA upstream 731715 43394293 ~ 43394499 (+) True G17969
TU22213 lncRNA upstream 890178 43235820 ~ 43236036 (+) True G17909
TU22469 lncRNA downstream 245391 44376993 ~ 44377228 (+) True G18125
TU22471 lncRNA downstream 255841 44387443 ~ 44387949 (+) True G18127
TU22536 lncRNA downstream 491765 44623367 ~ 44667457 (+) False G18186
TU22537 lncRNA downstream 530787 44662389 ~ 44714164 (+) True G18186
TU22555 lncRNA downstream 537821 44669423 ~ 44670878 (+) True G18196
AMCG00017070 mRNA upstream 270890 43843414 ~ 43855324 (+) True AMCG00017070
AMCG00017069 mRNA upstream 284624 43825329 ~ 43841590 (+) True AMCG00017069
AMCG00017068 mRNA upstream 311896 43806964 ~ 43814318 (+) True AMCG00017068
AMCG00017071 mRNA upstream 330644 43781424 ~ 43795570 (+) True AMCG00017071
AMCG00017072 mRNA upstream 352762 43768858 ~ 43773452 (+) True AMCG00017072
AMCG00017079 mRNA downstream 15110 44146712 ~ 44160471 (+) True AMCG00017079
AMCG00017080 mRNA downstream 233004 44364606 ~ 44371508 (+) True AMCG00017080
AMCG00017081 mRNA downstream 241286 44372888 ~ 44385986 (+) True AMCG00017081
AMCG00017082 mRNA downstream 257310 44388912 ~ 44411339 (+) True AMCG00017082
AMCG00017083 mRNA downstream 314019 44445621 ~ 44453494 (+) True AMCG00017083
TU21955 other upstream 1728427 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 5622582 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10025351 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 10078494 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 10453594 33668629 ~ 33672620 (+) True AMCG00016901
TU22550 other downstream 523050 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 5271117 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 5581922 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 6420278 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 6427848 50559450 ~ 50561788 (+) False G19114

Expression Profile