RNA id: AMCG00017079


Basic Information

Item Value
RNA id AMCG00017079
length 2382
RNA type mRNA
GC content 0.49
exon number 9
gene id AMCG00017079
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44146712 ~ 44160471 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCCAGGGGGCCATACTTTTTGTGACTTGTATCTGGCTGCTGAGTCTGACAGCCTTCGCCCAGGATTGCATGTCAGTCCCTTCACAAAATATAGATTTCTCAGTGCCCTACACTTTTCCTTACTACCAGACTCTGAGTCCTGTACAAAACATAGTGACTAACACAACATTGGCAAGCGGTACAATATATGTGGCTTCACGGAATATTATTGAATCTGTAAATAGCAGTTTTGGTAAATTATGGGAATTACAGACTGGTCCAGTGGGTAGCCCTAAATGCCAGATCTGCAGCTTGTGTGACATTGATGGAGACTCCAAAATCGCAGAGGACACGGATAACCAGGTCCTGTTGGTGGATCCATATCTTCCATACCTATACTCTTGTGGCAGTTCTCAGTATGGTGTCTGTTACTTCCATAACATTTTAGATGATGGATCACTCCTTGATTCTACTTGCCTTTATAAAAAAGAGTCAAATACACCTTCAGAATGCCCAGACTGTGTTGCTAGCCCTCTGGGTACAAAAGCCACTATTGTGGAAGAAGGCCAGACTGTGTACTTCTTTGTGGCGGCCACTGTTGACCAGAAAGtgacacaaacatacagcagGAAGTCCATATCGGTGCGGCGGCCAGTGTCAACAGAGGACGGATTTTACACAGATGTGCAGGGGCTGACTGTTCTTCCGGAGTTCCTATCATCTTACCCcatcaattacatttacagctttTACACTCAGGATTATGTCTACTTCTTGTCggtgcagagagagagtgtggacGTGCCTTTGTCACCCTTTCAAACACGCCTAGGACGGCTCCCTCGCTCAGAGTGGGAGATGCGCCATTATCGCGAGGTGGTTCTAGAGTGCCGCTTCGAGCCAAAACGACGGAGGAGGGAAGTTTATAGAGATGTGGTCTACAACGCACTGCAGGCAGCCCACTTCGGGAGGGCTGGCAAAGAGCTGGCTGAGGAGCTGGGGGTGGATGACAAATCTGAAATCCTGTACGGGGTGTTCGCTGTGTCTGAGCCAGAGAAGGGGCTTCCCTCTCCGGACTCGGCTCTGTGCGCCTTCCCTATGGATAGAGTCAACAAAGCCATAGAGAATGGAGTAGATGCATGCTGCTCCTCGGGGACAGAACGCCTCTCCCGTGGACTCTGCTTTTTCATGCCTTGTGAGAACTGCCCCCATGAGATGGATAACGAAATGAGCTGCATGGACCAGCCCACTATGGTGTCCCAGCCCTACTACAGAGTGGACCTCTTCAACGGGAACATGAAGAATGTGCTGCTGACATCTGTCTTGGTCACCCCCATTGACAACAAAACTGTTGCCCACATAGGGACCTCAGATGGAAGACTTCTTCAGtttgtctTAAGAAGATCAAGTCCAATTATCTTTGCAAATTATTCCCTGGCAGAAAACCAACAAGTGTCTTCAATAGCCTCTGAGTATTTAGCAGATTccttgctttttgttgttggaaACAAGGTAATCAAGGTGCCCAAGAAAGGACCGGGCTGCCGCCACTTTCTGAATTGCAACACGTGCCTCACGGCCCCAGAGTTCATGAGCTGTGGTTGGTGTGATGGGGTCTGCACCTGGAAGCATGAGTGCTCCACCATGTGGAGGGATGAATCCTGTCCACCTGTCATCACTCAGTTCTTCCCAAAGATGGCTCCCCCTGATGGCAAGACTGAGCTGAGACTGTGCGGCTGGGATTTCCAGTCCCCTCAGCGTCGTGCTATAAAGCCAGAAACTCACCTGGTGCGAGTGGGAGAGACGGTCTGCGAAGTGGTGCCGGCCAAGAGCAACAGCTCACAGCTGATCTGCAGGCTTCAAACTGGAGCCACTGAGCTCTTTCAGCCTCTCCAGATCACTGTGGAGGTACACGAAGGGAAAGTTGAAGGTCCATATTCTATTGAGGGGAAGGCCCAAATCGATGGATTCACATTTGTGGTACCCAATATCACTGAGATCCTGCCAGACTTTGGACCCATAGTAGGCGGAACCAAGATCACTGTTACTGGGCCTTACCTGAACACAGGAAATCAGAGAAATGTCACCCTGGATGGGatcaaatgtaaaatcataAGtgttttaccTACAGAAGTGAACAGCTCTGCAATTGTCTGCGTGTCACCCCCTGTTTCCAATGTGAAAAGTGCTAATCTGGAGGTGAGGATCGATGAATCTCAGGTGCCTACCATCAAGGACTTCCACTATAAAAAAACTCCGACCATAACTGAAGTGCTTCCAGACTGCAGCTTTGACAAAGGGTCAAACATAATTATCAAAGGCACTGATCTGGATTCCGTCTACAAGACTGTCATAATCTTTGAGCCCAGTGACAAGACTGACAACAGCCTAAAGACTACG

Function

GO: NA

KEGG:

id description
K05100 MST1R, RON, CD136; macrophage-stimulating 1 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22414 lncRNA upstream 43313 44102026 ~ 44103399 (+) True G18077
TU22305 lncRNA upstream 646236 43500170 ~ 43500476 (+) True G17987
TU22306 lncRNA upstream 675866 43470070 ~ 43470846 (+) True G17988
TU22284 lncRNA upstream 752213 43394293 ~ 43394499 (+) True G17969
TU22213 lncRNA upstream 910676 43235820 ~ 43236036 (+) True G17909
TU22469 lncRNA downstream 216522 44376993 ~ 44377228 (+) True G18125
TU22471 lncRNA downstream 226972 44387443 ~ 44387949 (+) True G18127
TU22536 lncRNA downstream 462896 44623367 ~ 44667457 (+) False G18186
TU22537 lncRNA downstream 501918 44662389 ~ 44714164 (+) True G18186
TU22555 lncRNA downstream 508952 44669423 ~ 44670878 (+) True G18196
AMCG00017078 mRNA upstream 8781 44126214 ~ 44137931 (+) True AMCG00017078
AMCG00017070 mRNA upstream 291388 43843414 ~ 43855324 (+) True AMCG00017070
AMCG00017069 mRNA upstream 305122 43825329 ~ 43841590 (+) True AMCG00017069
AMCG00017068 mRNA upstream 332394 43806964 ~ 43814318 (+) True AMCG00017068
AMCG00017071 mRNA upstream 351142 43781424 ~ 43795570 (+) True AMCG00017071
AMCG00017080 mRNA downstream 204135 44364606 ~ 44371508 (+) True AMCG00017080
AMCG00017081 mRNA downstream 212417 44372888 ~ 44385986 (+) True AMCG00017081
AMCG00017082 mRNA downstream 228441 44388912 ~ 44411339 (+) True AMCG00017082
AMCG00017083 mRNA downstream 285150 44445621 ~ 44453494 (+) True AMCG00017083
AMCG00017084 mRNA downstream 307648 44468119 ~ 44477790 (+) True AMCG00017084
TU22431 other upstream 15110 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 1748925 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 5643080 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10045849 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 10098992 34047371 ~ 34047720 (+) True G16546
TU22550 other downstream 494181 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 5242248 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 5553053 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 6391409 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 6398979 50559450 ~ 50561788 (+) False G19114

Expression Profile