RNA id: AMCG00017084


Basic Information

Item Value
RNA id AMCG00017084
length 2202
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00017084
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44468119 ~ 44477790 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGATCAAGTCAGTGATACCCAGCAATGTGTTTGAGGAGCCCATAGTCAGCAAGACTAAGCATCCTGATATATTCAGTGTTGAGaTAAGACTCAATGCTTCACTGGACTTTGAGAGTGTGCACATCTACACCATATTCCTCAGACTGGTCACTGCCAATTCCACTGTGGAAGAGAACTTCAATGTGTTTGTGATAGATGTCAATGAACCACCAACATGTTTCTTCCAGTTTCCAGGTGCTGAGGTCCAGGTCCCAGAAAGCTTGTCTGTTCCAGCCCAGATTTACCAAGTTTTGGCCTCAGACCCTGATCAAAATGACACGCTCAGTGATTTTATTATCTATGTGACCGTCACTGACCAGGGAGGGGAATCCTGCAGCGGCACACTAAGTTTAAAGGTCCTGAAAGTCTTCATCCACCCTCTCACATTTATAAATCCTTCCCAGAATGTCACCATCTATGAGAACAGTGGGGAAAATGACTACGTGGCAACTGTCACTGGCAATGGCTCCAATATACACTATGATTTTGTGGATGCTTACCAGCATTTCAACATTGAGCAAGGCTCTGGGATTATCCGGACTGCATACAGTCTTGACCTGGAAAGGGAGCCAGTGCTTCAGTACAGAGTCCTGATGGTGCGGGCCTACAGTACAGCAGACCTCTGCAGTGGCACTGCCACTGTAGCAATCACTGTGCTGGATGTCAATGAATACCCCCCTCTCTGCTTCCCCCCTGTCTTGGTGCTAACGGTGTCGGAGACAACTGCAGTGGGAAAGTCTCTGGGTACCGTGAAGTGCTACGATCCTGATGCCAGTAAAACTGCCCTGGATTACCAGCTCCTGACCAACAGCAACTCGCTTTTCAAGTTCCGTCTGCAGAATGGCCAGCTGCAGGTGAATACCACTCTGGATTATGACAATGCTGCAATTGCCCTTAATAACTTTCAGTACCAGGCCACCATTTTAGTTAATGATAGTGGCATTCCCTCCCTCACGACTGCGGTTCGTGTGCTGGTGACGGTGACCCCCGTCAACGAGTACGAGCCTCAGTTTCAGGGTCCTTTTGTGttcaatgtaaatgaaaatacaccCAGGGCTGCTGTGATTGGGGCAGTGAAGGCCACTGACAGAGACTGGGATTTCAATGCCATCCGCTACTCAATCATCAATGGGGAAGGCTTCTCCATCGATCCTCAGAGCGGAGAACTTTACCTCAGAAGAAGCCTGGACTTTGAGCACCAGACCATACACCATCTGAGGGTGCAAGCTATGGATTACAACCAGGATGTAGACCCCAGCATGCAGAAGAGTACATCGGAAGACTTTTCCATCCATGTGCAGtacatttctctctctccaccctcACAGAACATCAATGATAACCCACCAGTCTGTAATCCATTTCTGTACGAATCAACCATTTACTCCACACTTGCTTCAGGAGAACCCATTATCACACTGAGCTGCATGGACATTGATAACAATGTGTTAACAGCAAAAATAACCAATGGTGCAGTGACTGATCGTTTTTCATTGAACGGCATGAATCTCATTTCCAAAAACATCTTCTCCTATAATCCTGAGGGGTTATTTGACCGCACAACCTTTGAGGTGAACATAGAGGTCTCAGATGGCAAGCACTCCACTGAAGTAGTGGCGATCATTCACGTGATTCCATGGACGACCACTGTtcccaccaccactactactaccacGACAAGGGCCCCACAGGTAGTGACCATAGTGCAGACGTACTGGGAGCCAGATATCTGGTTTGTGGCTGTCCTGACTGTCACTGGGGCTCTGGTCCTGATCTGTCTGGGCCTCCTCATCTGGAAGATCCTTGTTTGAGATATGAAGAGCGTTGAAGAGATTAGGACCAAGAACCCTTCTGCACAAGCCGAGTCGGTGATCCCGAGCCTGCAGGTCAGTCCAGTGCTGTGTCCGGTAGGTCGGCTCAGCTCGAGTCCAGGCAGGTGTCACAGCGGAGGAGAGTGTGGAGAGGGGAACTCAGAGATCCGATGAGATTTGATGGAAAAGCAGAAGATCCAGGTAAGGTTTGTTTCTCACAAGCCAGAGGGGTTTATCTTCATTAAGGGTCGGGGGCGCGCCGGTGGCTGTAGGAACAGAAGGATGTGCGTTTCATGTGTGGAGTGGCTGGCACAGGACGGGAATGGAGACCCCATCACAGTGTCATAG

Function

GO: NA

KEGG:

id description
K16504 CDHR4, CDH29; cadherin-related family member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22471 lncRNA upstream 80170 44387443 ~ 44387949 (+) True G18127
TU22469 lncRNA upstream 90891 44376993 ~ 44377228 (+) True G18125
TU22423 lncRNA upstream 267081 44116966 ~ 44201038 (+) True G18084
TU22414 lncRNA upstream 364720 44102026 ~ 44103399 (+) True G18077
TU22305 lncRNA upstream 967643 43500170 ~ 43500476 (+) True G17987
TU22536 lncRNA downstream 145577 44623367 ~ 44667457 (+) False G18186
TU22537 lncRNA downstream 184599 44662389 ~ 44714164 (+) True G18186
TU22555 lncRNA downstream 191633 44669423 ~ 44670878 (+) True G18196
TU22557 lncRNA downstream 193502 44671292 ~ 44671870 (+) True G18197
TU22623 lncRNA downstream 471244 44949034 ~ 44952964 (+) True AMCG00017099
AMCG00017083 mRNA upstream 14625 44445621 ~ 44453494 (+) True AMCG00017083
AMCG00017082 mRNA upstream 56780 44388912 ~ 44411339 (+) True AMCG00017082
AMCG00017081 mRNA upstream 82133 44372888 ~ 44385986 (+) True AMCG00017081
AMCG00017080 mRNA upstream 96611 44364606 ~ 44371508 (+) True AMCG00017080
AMCG00017079 mRNA upstream 307648 44146712 ~ 44160471 (+) True AMCG00017079
AMCG00017088 mRNA downstream 178997 44656787 ~ 44658914 (+) True AMCG00017088
AMCG00017090 mRNA downstream 215193 44692983 ~ 44714100 (+) True AMCG00017090
AMCG00017096 mRNA downstream 237601 44715391 ~ 44739801 (+) True AMCG00017096
AMCG00017102 mRNA downstream 390124 44867914 ~ 44876540 (+) True AMCG00017102
AMCG00017097 mRNA downstream 404075 44881865 ~ 44891870 (+) True AMCG00017097
TU22431 other upstream 336517 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 2070332 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 5964487 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10367256 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 10420399 34047371 ~ 34047720 (+) True G16546
TU22550 other downstream 176862 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 4924929 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 5235734 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 6074090 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 6081660 50559450 ~ 50561788 (+) False G19114

Expression Profile