RNA id: AMCG00017085


Basic Information

Item Value
RNA id AMCG00017085
length 1134
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00017085
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44456778 ~ 44458554 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCGGCCTGCAAGTCTGTGCCTGTCCGCTGTGTTTGCGCGATTCTGGAGACTGCCTGCGGGAACAGATGCAGTGTGTGATGAAGACACTGCAGGACCTGAAGCAGATGAGAGGAGGGTATCAGGTGCCCACCCGGCCCACGCTGGCAGCAGTGCGGGGATGCCAGCAGAGGGTGATGCAGAGAGAGCGCTTAGCCCGGCTTCGCATCTCCGAGGTGTCCGAGTCCAGTACCTATGACTCTGCCTGTTGCCTAGCAACCACAGTGGAAGAGGAGACTGGCAGCCGGCTGGCCGAGGGCTCCCCCAGCAGCGAGAAGAGCCTGGAGTTTGACTCGGGCTACTCTGAAGCCTCCTGGCAGGACGACGTTGTGGTTCTTCGTAGGAGCAGGAACGTCAGAGTGTCGTCGGCGGCGTGTCTTCGTACCAACAGGGCTCCCAGCGGGCGTGTGAGACCCAAATCCACATCGGACGCTTGCCTGGAGCGCTGGACCTCGTTTGAGGCCAGCGACCCCGAGGACTGGACCACCTCCCTTCTGACCAGGGGACGCAACCGGCAGCCACTGGTCCTGGGAGACAACAGCTTTGCAGACTTGATTGAGAACTGGATGGACCTACCGGATTGCCCAGACCCAGTAGAACTGAAGCCGAACCCAGGGAGACGTGTGGCCAAAGACTTTTTGTTGAACATGAGGCGCAAACTGTCTGGGATGTCAAAGAGCACAGACGGGCGGGGGAAAGCTGTGGACGCCACAAGAGCACACAGGACTGGAGCTTCCAATCGCCTCTCTTGTCCAGTGGGTTTCCAGGGCCGAGTGCCTTTCTTCCACCAGTCTCACACAGGACTGCATGAAATGGGAACAGACTTTTACCAGTTTACTGAACTCATGAAAACGGGCAGCCGGCAGCCAATCATCTGCAATGACATCATTGGGTATATCTGAAAGACTTCACAGCTACATCCTCATCAGTTCTCAGTGCATTACTTCACCTttgacagtattttattttatgtatttcatatctGTTTTGAtaataaagcattattttttttactaaagaAAAGGGCTTTTGTTGGTCATTGTGatgtatttatctttaatgaagatgtgtttatatataatataatcctTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22511 lncRNA downstream 68783 44387443 ~ 44387995 (-) True G18164
TU22503 lncRNA downstream 79557 44376997 ~ 44377221 (-) True G18156
TU22443 lncRNA downstream 318236 44136188 ~ 44138542 (-) True G18101
TU22403 lncRNA downstream 564871 43837177 ~ 43891907 (-) True G18066
TU22342 lncRNA downstream 822356 43633770 ~ 43634422 (-) False AMCG00017067
TU22583 lncRNA upstream 194901 44653455 ~ 44655994 (-) False AMCG00017091
TU22596 lncRNA upstream 340900 44799454 ~ 44829026 (-) True G18219
TU22678 lncRNA upstream 659736 45118290 ~ 45151671 (-) False AMCG00017105
TU22760 lncRNA upstream 1394508 45853062 ~ 45916620 (-) True G18352
TU22790 lncRNA upstream 1643406 46101960 ~ 46102188 (-) True G18364
AMCG00017077 mRNA downstream 330869 44102018 ~ 44125909 (-) True AMCG00017077
AMCG00017074 mRNA downstream 543355 43881278 ~ 43913423 (-) True AMCG00017074
AMCG00017075 mRNA downstream 584683 43857493 ~ 43872095 (-) True AMCG00017075
AMCG00017067 mRNA downstream 797176 43634296 ~ 43659602 (-) True AMCG00017067
AMCG00017059 mRNA downstream 1091909 43344470 ~ 43364869 (-) True AMCG00017059
AMCG00017086 mRNA upstream 25057 44483611 ~ 44503250 (-) True AMCG00017086
AMCG00017087 mRNA upstream 107366 44565920 ~ 44566162 (-) True AMCG00017087
AMCG00017089 mRNA upstream 114970 44573524 ~ 44600280 (-) True AMCG00017089
AMCG00017094 mRNA upstream 175018 44633572 ~ 44634705 (-) True AMCG00017094
AMCG00017095 mRNA upstream 181533 44640087 ~ 44651849 (-) True AMCG00017095
TU22128 other downstream 1592162 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 3239547 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 6397839 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 6397839 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 6698307 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 4030573 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 6972301 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 6987033 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 6987033 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 7397692 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile