RNA id: AMCG00017093


Basic Information

Item Value
RNA id AMCG00017093
length 7537
RNA type mRNA
GC content 0.42
exon number 20
gene id AMCG00017093
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44662419 ~ 44684879 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCCGCGTGCCCGCGGCCCGGAGTCAGACGCGGCGCGATGGCTGAGGGAGGCGGACCCGAAGCGGGCAGCGGGGCAGAGCCCGACCCGGAGCCGGTACCCTGTCAGAAACCCATACCTACTACCGAAAGCCAGAAACAAAGCATCGGAGCCCTACTCAAAACACCGCTTCGTGGTTGAGCATGGCATGTTCGTGAAGCACTGTAAAGTTGAAGTCTACCTGCTGGAGCTTAATCTCTGCGAAAACAATAACATGGACAATGTGGTGACACGACATTTCAGCAAAGCTGATACCATAGACACAATTGAAAAGGACATGAGAACGTTGTTCGAGATCCCAGCAGAGAAGGAAACTCGTCTGTGGAATAAATACATGAGCAACACATACGAACAGCTGAACAAGCCGGACAGCACTGTGCAAGATGCCGGCCTGTTTCAGGGACAGGTGCTCGTGATCGAACAGAAGAATGAGGATGGCACGTGGCCCAGGCAAGCCAGTCACCCAAAGTCTAGCACAGCCACTTCCAGGAATTTCACTACCTCCCCAAAGCTTTCATCCAACTCTTCAGCCACCATTTCGTCTACTGTAACCAATGGGGACAGCAGCAACTCCAGCTACACTCTGAACAACAGCACCAGCGGCTACAACTCCTACAGCTCATCGTACAACTATAGAGAAACTCAGACACAGCCAGGTCTGTGTGGTCTCAGCAATTTGGGCAATACCTGCTTCATGAACTCAGCATTGCAGTGCCTGAGCAACGCCACCCCCCTGACAGAGTATTTCTTAAAGGATGAATATGAGGCAGAGATAAACCGTGAGAACCCGCTTGGCATGCGGGGCGAGATTGCAGAGGCCTATGCGGACTTGGTAAAGCAGATGTGGTTGGGCCGCAGCAGCTACGTGGCTCCCCGGTCATTCAAGACCCAGGTTGGCCGCTTCGCCCCTCAGTTCTCGGGTTATCAACAGCAGGACTCCCAGGAGCTCCTGGCCTTCCTGCTGGATGGACTCCACGAGGACCTCAACCGCGTCAAGAAGAAGCCATACCTGGCACTAAGGGATGCGGAGGGCCGCCCAGATGAGATTGTGGCAAAGGAAGCCTGGAAGAATCACCGTCTTCGGAATGACTCAATTATTGTGGACATCTTCCACGGGCTCTTCAAATCCACCCTGGTGTGTCCGGAATGCGCCAAGATCTCGGTCACCTTTGACCCCTTTTGCTACCTCACTCTTCCGCTGCCCATGAAAAAGGACCGTACCATGGAGGTGTTCCTGGTCCGCACAGACCCCCAGTCCCGGCCTATGCAGTACAGAGTAGTGGTCCCCAAGCTGGGAACAGTGACAGACCTGTGCAGTGCATTGTCTAAACTCTCTGGAGTCGCAGCAGATAATATGGTAGTGGCAGATGTATACAATCATCGGTTCCATAAAATCTACCAGCGGGATGATGGACTCAACAACATCATGGACAAGGATGACATTTTTGTGTACGAGGTGGGAGAGGTGGATCCAGAGCGGATCAACCTGCCTGTTTACTTCAGGGAGCGACACATGAAGCATTCTGGTACCTCCACGGGAACACTGCTGTTTGGGCAGCCCCTGCTCATCACTGTCCCCCAGAAGAGTCTGGCTGTCGACTTTCTGTATGAGAAAGTGCTGGAGAGAATTGGCGCAGGGACTGCCAGCACCGCCACTGGCAGTAGTCAGCCACAAACAAAGCAGCCAGGGACCTGCAATGGCCCCAATGGGGTTTGTGAAGGGGAGGACGAAGCCATGGATCATCAGGAGGAGATCAGCCTGGAGCCAGACCACAGTCAGTCGGAGGGCTCAGCGGGGGAGGAGGACAGCGAGGACCTGGAGAACGGGCTAGTGGGCAACACGCCAAAATCCTCCGTCAAGCCAGGGACCTGTCGGGTCAAGCTGTTTTCCTTCAGCATGGTGAATTCATACGGAACCGCTGACATAAGCCCCCTGCCCACACATTCCACAGTGGCAATTGACTGGGATTCTGAGAAGAAGAAACTCTACTATGATGACCAAGAAGCAGAGGCCTTTGAGAAGCATGAGAGCATGCTGCAGCACCAGAAGAAGAAGGCCACCGTGGCCCTGAGGGAGTGCATTGAGCTTTTCACCACAATGGAGACACTGGGAGAACATGACCCCTGGTATTGCCCCACTTGCAAAAAACATCAGCAGGCTACAAAAAAGTTTGATCTGTGGTCACTGCCTCGCATCCTGGTAGTACATTTGAAACGCTTCTCTTATAACCGCTGCTGGAGAGACAAGCTGGACACTGTGGTAGATTTCCCAGTCAGAGATCTGAACATGTCCGAGTTTGTCTGTGATCCGAAGGCAGGGCCCTATGTTTATGACCTCATTGCTGTGTCTAACCACTATGGGGGAATGGGTGGAGGGCACTACACGGCTTATGCCAAGAATAAATCTGATGGGAAGTGGTATTATTTTGACGATAGCAGTGTCTCGTCTGCTACAGAAGATCAGATTGTGacaaAGGCAGCGTATGTACTGTTTTACCAGCGCCGAGATGGGGAAGAGCCCCAGAGCTCTCCTCCTTCAGCCTCACTGGGAGAGGCTCCAGAGACGGGCGATGACCACATGGACACCAACTGAAGGGCCAAGGATTCAGGGACATATAGTGATGCAAAGACGTACATGTAAATGCAGACACGTACCTACTTCAGCAATTTAAACCTCTGTACTGaatcaacatttatatattttttttctttcacatgcaCCATcaccaatataaaaaaaaaaaaaaaaaaaaaaaaaacataggtgTTTGATAAATAAATTGAGCAGCTCCTTTATGGGGGTTGGGCCAAGCGGATGTTTGGAACTTATTACCATTGCGTATATTTCACGTTTGAGAATAAAAGGCAAATGGCACACTGTAACCTCATACTAGACGACCAGAATGTTAGACCTCACTTAAACTGCATAGATTAAAAAATTATTTAACTTGACTGGTAACCACTAGAAAAATCAGAAGAAGCCAAATATGCACATTTTCAACCAAAGCGTTCCAAGATCTGCACACTTAAGCATATTCTAGACTTGCCAACTGTAttgagagaggaaagaaaaacacaaaaaaaaaaaaaaaattaaatctgtattcACTTGTTGACAAACTGGAGTTGTTCCAGTACAGAGATTAATTCACATGCAAGACCATTTTTAATACTGAGTGCGTGCACACACATTGAGAATCAAACACATCAAACACTGCCCATATAATCGCATGGAtcctgtcaactgtgctacttCAGGAGAATGGAACCATCCAATTACGGACCTGTAAACCGGAGTGGAGGGAAGCTCTGGTTTCCCCTTTGAGATCACCTTAGCCTTGTTTTGGGTATCACTGCAGCGATCAGTTCCCTCATGCAACATCCTTGGCAGCAATGTTTTATCCCTTGGCTGACTGTGTTTCCGGCGACTTCTTAATGCCTGCAGTGTAAGGAGCACACCACTTACAGGAGCTGAAGAAATCACACCACTTCAGCACATATGTCCACTCTGTACAAGCTGCCCGTGTTCCAGTTTTGTGggctctaaaaaaaaaataataataataaataaatcctgtcACCctctggaggaaaaaaacaaaacaaaaaaaattacgTAATAAATGTGCTGCTCTATCTGTGTAACACAGAAGCACCAGCTGCCTTTTTCAATGAGAACTCTTTAAAAGCAGGAACAATGTCTGCAGAAGACTtttaggattttctttttcttcaggaGGATCAGCTTGcgatgtaaaaacaaaatgcgtGTGACCAGTGGTCGGCAATTACTGTTCCTAAGTTGGCATGGCTTCGAATCAAGACTCTCGACCACTTTCACTCCTTCCCGGGTGGAGATATGGTCATGTAGACGTATTCCTAGACGAGGTAAAGCTCAGATCCTGTTGTCAGTAGTTTGACAGCATAGTCTACTTAAAATAACTGCTTTGAGATAAACTATAACTTCCTAGAAGGCCAGTAATGGTTTCCACCTCTGCCATTTTGACAGCTGACTCGGCTCCCCTTCTGGACGTCTGTCTTAATGCTGACTAGGATTTTCATCTTGGGTGCTCTGGCTGTTCCTCTTAAGTACTGTAAtagatgtgcatttgtgttctgaGAAAACTGCTTTGGggataaaaaacatttttgtcctttttgtttagttttttttttttttttaaagcctgaaaaatacaaatttcaaattCTTGGGAGTGGTGCTAAATGTAGTGAACTAAAAGCTGCAggggcaaaaaaaaacacccaatgGGACTTTTggactgtgctgtactgtagtaaAGGGCATGGGCATGCATGGGGATATGCTTGCTTCACCACAGTCATAAGCAACTATATGTATTGTCTTGTACACTGATGacattttagtttatattaaaatatatatatagctgatGGTAAAGGAAAGGTGAAGGGTGTGAAGGCATTAAAACTTTTTAATCCAGGTTAAAATCTGCATCAAAACCTTCTTTAGAGGAACATGGGGACTACATGCTTAATAGGACATGCCTGTATTTCATGTAATCTTTAAGgtgcatttgtattcattttactaTAGGGTAAACAAGCAGACCTAGAGTAACTGGTTTTGGCAGAGAGAAAAGTTAATATAATTCAGAATATGTGGACAAGCATCAGTTTCTTTTaacatcaaaaaataaactttcagcTCAGCGGATTagattatttgaaaatacagcCTTTCTTCAAACTGACGGATGGTGTCCCACCTCACTGTTTCTTGTCTGGCAGTTCTGCATTGGTATGTCATAGCGTGTAACCTTATTTAAACCGTTCCTGGCGTTTCTTTCCTGACCTTTTCAATTTTTTGGGCCTATTGTCCAAATTAAGTTTCACAAAAATATTGCATGTTGCAATCCTGCTTCTTGGGGAATATTCATTGTTTACACTgaagaaaatgcaatgtaagAATATAATCAGTAGATAGAAATAGGTGCCTTCAATCTGGGAGTAATGAGTAGATAGgttagtatttaataaaatccttatccatatttttaaatactacactgctatataatacaaaatcagGCTCTTCGTATTGCGAAAGAACAAGCCTGTCTATACAATCGATCTGATATGAAATATTGATGATTTAATGCAGAAGatgcttattttatattttaataacctGTAAAATGTCCcagtttaagtttgtttttcatttaaagtgaAACAAAGATGTACACAGTTCttagtcaaatacattgtttaggATAAAAGTAAACAGCCATTTTTGATATTTATACAAAGAACTACTGATGGTTGAGCTACATTTGGATTTGCTGTGACATTCtgcttttttttgggggggaagtGAATGTTTACCAAAGTGAAGGGAAGTGTATTAGTTAATAAGCTAAATTTACTGaactataatataaacaaacaaataaaactaggAATGTGATTTCACTATATATTTAGATaaggttgtttttgttgtgctctactcaaaaaagtgaaaaatgtaaaatctaaaaCTTTTTTATCCTTACAGATGATTACTACccgtgatgtgtgtgtgtgtgtgtgtgtgtatatatgtatatacacacacacacacacacatacatatacacacattttcaatttttcttttaatatgtttattactCTGTAGAAGTGTGGCTCCTACCAATGACAGATCTGAATAACTTaatgtgaaaaactgaaaaccacatttttgtttttagttaaaaaTCCCAAATGCTGGGTTTAATTCACATTAACTAAACCTTGAATTAACTTACACAGTTTCTAGTTACAagtgcaagtttttttttttatatataaattaattgcatGCATTTCCTGCCTGACCAAATGAAGAAAAGCTGTATGTATTTAGTCAATTGGAAAGGTCAAATCTGGTTCAGGCAGCCTTTTTCTGATTGCaaccagtttgtgttttttaagcagTACGTGTACAATAAAGGAAGTAACAGCAGGGGTGTTTGTGCTTTAAATATCCAATTTaaggcttttcttttcttttcttttcttttgttttcttttaaccaATTCAGTAGACCAACTTTAGCAGCTTTAACTGAACACTTCAACTTTAATTTACCCCTAGCATGTCTGTAATGTCTCCCAAGGTTGCTTACTTAAAATTGGCAGCCAAGCAAGGTATTTCTATAGAGACCTATGGGATTCCataaaattatgcttttttgttttccccttctgAGTGTTTGTTCTGCATAACTAAAAgccataattattttataataacaagCGATAATTCACACCCAACCCATGGCTTGCTTTGAgtgtcattaatttatttgtatacaaCTGCTTACAGGTTGGAATGCATTTGCCATTTTGTAATGGCTTACAGTGTGCGACATAATAAAACAGTGCCGTAATATAATGTTCTTGTTATTGGGTTGTTTACTTAAAATGGGTTTCTCATTCcatttgtacttttgtaaagTATTATGGATATTCATTGGTATGGGCTACGGATATTTTTCTCCAAATCATATCTTCTGCAAAATAGTTATTTTCTaaccaagaaaaaatataaaaatacataaaagctgTTATGGTGTGTGAATTTTGAGGTTCTAGCTTCATATAACTTAAAGTATAGAGTTGCaccattatatttttcattattctgTTCAATAACTTTTGCTCCAGTAGGGTTGGGGGTTGCATTCTGTAATTCAAAAAAGGAGTCTTGGATTGTTGAGATATGGTGTTCACTGGCTCCctgagtttttatttaatgtctggGTTGATTGTCACATGTGATGCAGTGTTCATGAAATCACTTGACACCCCATAGTgcttacattatattatttgagCTTGGGTATTAAAATTCAGAATCTCAAAGCTTTTATGGTGACACATTTTCCCTTGTATACATACACCTGGCAAAATAAAGTGCTCTGGTTTAAATTTGGATCTAAGCATTACAGCcaagtgcaatacatgtttacatccatgtcaaaataatgtaatcattgAACTTGAATCCTCAATCTGAAATGTGTGGGAGGTATCCATAATTTAAAATCCTAGTGTAGAGACCTATGGGATGCCTTAGCTcatctttttcattctttgtaGCCATAATTACTCATAAATGGGGAAGAAActatatgaatattaattagACATTTCCCGTAGTTTCATGAATACATGAAAGCCACTCCTCTGATTAACTTGGAATGTATGAGACCTCTCTTATGCTCAGTACTTGCACCTTACTGAAATATTCCAgtcttttaacttttaaattatttttatttttcttgtcgggatgttacatttgtatttatgacCTAGACACCCACCCCCTTGTAAAGCAGTCGGAAAGCAGTGAGGCACGCCAGAGCCCCAAATTAtgttgtacagtacagtatgtatgGAGAACTATGTAATAGGGTTCTAATTCATCAGTAAGGCAAGATACTGGTGTGTTTGTAAATTGCtgg

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11835 USP4_11, UBP12; ubiquitin carboxyl-terminal hydrolase 4/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22583 lncRNA downstream 6425 44653455 ~ 44655994 (-) False AMCG00017091
TU22511 lncRNA downstream 274424 44387443 ~ 44387995 (-) True G18164
TU22503 lncRNA downstream 285198 44376997 ~ 44377221 (-) True G18156
TU22443 lncRNA downstream 523877 44136188 ~ 44138542 (-) True G18101
TU22403 lncRNA downstream 770512 43837177 ~ 43891907 (-) True G18066
TU22596 lncRNA upstream 114575 44799454 ~ 44829026 (-) True G18219
TU22678 lncRNA upstream 433411 45118290 ~ 45151671 (-) False AMCG00017105
TU22760 lncRNA upstream 1168183 45853062 ~ 45916620 (-) True G18352
TU22790 lncRNA upstream 1417081 46101960 ~ 46102188 (-) True G18364
TU22792 lncRNA upstream 1417383 46102262 ~ 46106593 (-) True G18366
AMCG00017091 mRNA downstream 5514 44653734 ~ 44656905 (-) True AMCG00017091
AMCG00017095 mRNA downstream 10570 44640087 ~ 44651849 (-) True AMCG00017095
AMCG00017094 mRNA downstream 27714 44633572 ~ 44634705 (-) True AMCG00017094
AMCG00017089 mRNA downstream 62139 44573524 ~ 44600280 (-) True AMCG00017089
AMCG00017087 mRNA downstream 96257 44565920 ~ 44566162 (-) True AMCG00017087
AMCG00017092 mRNA upstream 737 44685616 ~ 44691949 (-) True AMCG00017092
AMCG00017101 mRNA upstream 207232 44892111 ~ 44901396 (-) True AMCG00017101
AMCG00017100 mRNA upstream 282394 44967273 ~ 44977924 (-) True AMCG00017100
AMCG00017106 mRNA upstream 375095 45059974 ~ 45068123 (-) True AMCG00017106
AMCG00017105 mRNA upstream 434806 45119685 ~ 45161137 (-) True AMCG00017105
TU22128 other downstream 1797803 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 3445188 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 6603480 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 6603480 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 6903948 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 3804248 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 6745976 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 6760708 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 6760708 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 7171367 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1683229 True 5215 TUCP 0.49 22 NC_048581.1 60972478 ~ 60999063 (+)