RNA id: AMCG00017098


Basic Information

Item Value
RNA id AMCG00017098
length 4227
RNA type mRNA
GC content 0.40
exon number 14
gene id AMCG00017098
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44902466 ~ 44923634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttcaatatttttaaacactgaagTCATGCTCTCGGTTTCGATCACTAATAGAGCAGTAAATCCACTGAAACAGGCAGTAAGTGAAAGGCGTAGTCCTGTCGGATGACGCGTGTAGGGCCAGTGTTCAGCCCGAGCGGGTCTGCTGCATTCCCCTGTCATACCTTGGGGCTTCCGCTGTGCAAACACACAGCACCGCCCTGTCTGCTGTCATCCGCTGTGCTGTCTGCATTGCATGAAACAGTAATTGCAATCTTGAAAAAAAATGCCACCTAAAAGAAGGGCAACTTCAGCTACCAAAGCAGGTGGTAAGAAGATCAAAGAGGAACCTGAAGCACCGGAGGATTCTTTCAAATCTGCCAAAGAGGCCCTGAAAGCAGCTCCAAAGGAGAAGTGCAAGAGTAAAGTGGATGAACATTGCAACGTATTCTGTGCTGAGaatgagTTTGACTATGAGGATGAAAATGGGCTTCTCACTTGCCCTGGAATTAGAACGGACACCTTAAGCCTCTTAATGAAAATTCAAAAGCTAGAATCAGAGCTAAAATATGAACGACGATGTAGAATCATAGCCGAAAAGGAGCTGAGACAATGTAAAGAAATGAACAACCTGCTGGCACAAATGAGGGGAACTGCTAATGAGTTGAAGTCTGTTTTGAACTGTGTCAAACTTGGGGTGGAAGATTCCCAAAACAGACACGAGAGTTCTCCCTCTGCAATAAACCAGGTCTCTGAGGATGTGACTGAGAACAATTCACAGgaTGATATATTTCTTGAACTACCCGGAGGTCTGAAAGTGCAGAAGAATTTGTACAACCGAATTTCAACCACAGACTTTAAAAAGTATACTTCAGAACTGCTGGTGCTGGTCTTCAATAGAGAAACTCTGGCTACCCATTCCCTCCAAGGCAGAAAATCATCTAATTCGAAAGAGGATTTCCAAAAGCCACCACTTCCTTCTGAAGAACTGGCCAATATAATtgATCTATGAGGATTATGACTGCATGCTGAACCAGACCAACATTGGCCATAACAATAACAAGTTCTATATTATTCAAGTTATAAAGTCAGGGAAACAGTACTATTGCTGGAACAGATGGGGGCGAGTGGGGGAAGTGGGCCAGTCAAAACTCTCAGCACCTTACAGTGACTCTGACAAAGCAAAGACTGACTTTGAGAAGAAGTTCAAAGACAAGACAAAGAATGACTGGAAGAATAGAGAGAATTTCGTCTCGCACCCAGGGAAATACACCCTGATTGAAGTGGACGGAGATGAAGACGTAGAAGTCAAGGTGGATACCGTTGACAGTGCGCCAAAAAGGGTTCTTCCCTGTACGCTGAACAACCACACCAAGGAGCTCATAGAGTTGATCTTCAGCAATGATATGTTTAAAGAGGCCATGGAGGGCATGAATCTGGACATTAAGAAGATGCCCCTGGGAAAGCTTAGTAAGGCACAAATCGCCAAGGGGTTTGAGGTCCTGGAGGAATTCGAGGATGccctgaagaagaagaagaagaacaaaggCTTTTTGGAGCAGCTCTCCTCTAAATTCTACACCATCATCCCGCACAACTTTGGACGGAACAGGCCTCCAGTCATGGCTGATATGGAAAcaatagagaagaaaaaagagatGCTTCTGGTCTTGGCTGATATTGAGCTTGCCCAGAGTCTCAAAGCCGAAACGGAAAAGTCCAAGGAGGAGATGATTGAAGCGGTACCTCACCCAGCTGACCAAGATTACCTGTCATTGAAGTGTGGTCTTACTCTGATGGGTAAAGATTCCAAAGAGTACAAGATAATACAGCAGTACCTTCAAGCAACAGCAGGAGGCTGGCGAAAACCGACCATTCGTAATGTCTGGGTAGTAAATAGGGACAAGGAgGCAGAGCGCTTTGAAGAGCATGACCACCTGGAGAACCGGCGTCTGTTGTGGCATGGCACTAACATCGCTGTCGTGGCAGCCATCCTGAAAAGCGGACTGAGGATAATGCCACACTCTGGGGGGCGTGTAGGAAGGGGAATTTACTTTGCTTCAGAGAATGCAAAGTCGGCTAGTTATGTTGGCACTACTTCCCAATCGATTGGAATCATGTTTCTCAACGAGGTGTCGCTTGGCAAGGAGCACACCATCACTGTCGATGACTCTAGCTTGAAGGCTCCTCCTGTGGGGTACGACAGTGTTGTGGCACATGGCCGCACAGAGCCAGatcCCTCTAAGGATACCTTCATCATGCTTGATGGCAAGAAGGTGATTGTTCCTCAGGGAAAGGCAATTCCCCAATCCCAGTATCAAGACAGCAGTTTTGGGGAGAGTGAGTACCTCATCTACAAGGAGAGCCAGTGCCGGATCCGATACCTTCTGGAAatgagttttaaataaatagagcTTTATAAAAACTAACAGTtggtaaaggaaaaaataaggaTCTTTGTTGCtaggtgtttctttttttttttttttagaaaaatatatagatttacaaTCTATGACAAGATTCAATGCTAAAACATGCCTACACACCATAAAAATAAGGGGGAAGAAACAATGTATCCAAAACCTGGATATTGTGTTCCATGACATCCATAAAAAGgaacattatacatttcaatcCATTCAGTCTTCTTAGAGCCTTTGAAGAGAGGAAatgcaggtttttattttcttacatacTGTACAAAAGTTCTCTATGGCCATAATTTTTCAAATTCGTGGCTAATGTTAAATGCGTTGTGTTTTTTGCCCTGTAAGTGTCAATTTAATGCACTTAAAACTGAACTGACGGATGTCCcaccttttcttttgtttgaatATTGTGCCTTAAGTGTCCATAAGAAAATGTATCCATCAGTAATATAATCAGCCTATGACTGCTTTTGATTTTTAACAGCAATTTAATAGGAATTTAGTGGTTTTATTCAATTCATATTCCAGTCGATTCTGAAATGAAACTTGAGAACAGGCTCTGTcctaataatacacatttaccACCCTCAAAAAAAAGTTTCTGCCATATTCACATATGACGTTCTACCTATTATTATATCTGACAAACTTTAGTTCATTTGCACCTTTTGTCAAAAATTCTGTCTCTGAgcaatgtcattgttttgtcaTGCACTTTATTGGGAAAAACTACCTTTTAAATATGGTTAGTTCTATCAACTTTACATGTTATATGTACATAGCTGCCTTTTAAACTAGAGCAATAGCTCATGAGCAGAATAGCTCTCCATACTTCTCAAATGTCATTTACCTTTCAGAAGAAAAGTTTGGTGTCTAGTAAAGATTATAGCTCCAACATGTaccaaatgaagaaataaaaattgttTACATAGTAGtcattacttcaattaaatgtgtgGGTAATTTGGCATGCTaggacttttctttttttacaaataaGACATTTACACCTTTACTCTTATGTTGATGctagcttttgtttttcaaaacattaatgCAATCAGAAAAGACCATCGATTCATAGTGTTGGTAGATCTacaagcaaattattacttgAACAGCTTTATTTAGAAGCAAGTGTAAAAAAGACCTTGCCTTTTTGTCAGTGTATTGGAAAATATTGCTCAGGAACAACTTGATAGTGtccttacaaaaatataaaatggtaGTAACTTGCTATTGCTAAATTCTGTGAATCCCATCATCAGCTAGTAATGTCTTCTTACTTGTGGCTGAAATGTCAAACCTCCCTAGAAGCTTGTAATACTTCTAGTGCACAATGACAtccatgttaaatatattatgacAGTGAATTTagaaattggaaaacaaatattttgtgtttatttcacatATGGAAGGAACATTCTAGATTTTACATGTAAACAAAAACTTTGTAGAACATGGCTATCTTTTTCTATGTCAGTTTGGCTTGTGTGTACTAGTATAGGGGGGTGAAAAGGATTTGATAAACTCACTGAATGTAAGATTTGACAGTTTGGAATGTTCTTATGTCCCTTCATGGAACTGGAAACAACAGTTGTGCTTTAATATTAACATGCTGTTACAGAGTTAGTCTGCATGTAAACAATTACACAAAGGAAACGAACAATAAGAAGTGGTAAACATTCTAATGAAAAGTTGACCAGGTGAGATTATTGTGGTTGTGTAAcactaaaattataaaaaaataattgtaattttgtttaaatgtttctccagaaaaaaatctaataaaatgaaactgtgcACCTTCCA

Function

GO:

id name namespace
GO:0090299 regulation of neural crest formation biological_process
GO:0006471 protein ADP-ribosylation biological_process
GO:0071696 ectodermal placode development biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22537 lncRNA upstream 188302 44662389 ~ 44714164 (+) True G18186
TU22557 lncRNA upstream 230596 44671292 ~ 44671870 (+) True G18197
TU22555 lncRNA upstream 231588 44669423 ~ 44670878 (+) True G18196
TU22536 lncRNA upstream 235009 44623367 ~ 44667457 (+) False G18186
TU22471 lncRNA upstream 514517 44387443 ~ 44387949 (+) True G18127
TU22623 lncRNA downstream 25400 44949034 ~ 44952964 (+) True AMCG00017099
TU22639 lncRNA downstream 62162 44985796 ~ 44986081 (+) True G18255
TU22699 lncRNA downstream 319850 45243484 ~ 45243983 (+) True G18302
TU22717 lncRNA downstream 603110 45526744 ~ 45527005 (+) True G18316
TU22733 lncRNA downstream 858563 45782197 ~ 45782467 (+) True G18330
AMCG00017097 mRNA upstream 10596 44881865 ~ 44891870 (+) True AMCG00017097
AMCG00017102 mRNA upstream 25926 44867914 ~ 44876540 (+) True AMCG00017102
AMCG00017096 mRNA upstream 162665 44715391 ~ 44739801 (+) True AMCG00017096
AMCG00017090 mRNA upstream 188366 44692983 ~ 44714100 (+) True AMCG00017090
AMCG00017088 mRNA upstream 243552 44656787 ~ 44658914 (+) True AMCG00017088
AMCG00017103 mRNA downstream 9422 44933056 ~ 44934249 (+) True AMCG00017103
AMCG00017099 mRNA downstream 25502 44949136 ~ 44961601 (+) False AMCG00017099
AMCG00017104 mRNA downstream 296480 45220114 ~ 45227676 (+) True AMCG00017104
AMCG00017113 mRNA downstream 1019416 45943050 ~ 46096926 (+) True AMCG00017113
AMCG00017112 mRNA downstream 1305415 46229049 ~ 46245266 (+) True AMCG00017112
TU22550 other upstream 246368 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 770864 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 2504679 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 6398834 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10801603 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 4479085 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 4789890 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 5628246 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 5635816 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 7890619 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile