RNA id: AMCG00017099


Basic Information

Item Value
RNA id AMCG00017099
length 2061
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00017099
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44949034 ~ 44961601 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGCCAGGATGATCAAGGGGGACAGTACTGAAGAAACCAAGATTGATCTTGAGGAAGTAGAGGAACAATCTGAGGATAATCCCCTCCAAGCACAAATAGACACACACCCCATGGTGGAGAAGAGAGACCCCAAAGGAGTAAACTCATACctcaaggTAACCTTTGAAGATGTGATCGCAGAACCAGACTCAGTCCACAGCTTTGACAAAGTGTGGATTTGGAGCCATGCCTTGTTTGAAGTTTCCAGACTCTGGTTTTACAGGATAATGTCTCTCCTCCTTGCAGTCCCTGTGTCTTTAATCACTGGAATACTGTTTGCTATATTAAGTTGCCTTCATATTTGGTATGTTAGCCCTGAAACACTTCCTGTAATGTGCATCATGCCTTGTGTCCAAATCTGCCTTATCAATATGCACTCAATTAAAACCATCTGGGGATCAGTCTTGGACATAGCAATTTCACCTTTCTTTAAGAGTATGGGGAAATGCTGCAACGCCATCAATCTGCGTTTGGCTCTTATGAGCTCTAGGCAGGCCTGGGACGCTGCCGTGCCCAGAATTGACAGTACAGCTCTTGCTGTCCGTAGCAGCTGTCCACTGGCATTTAGGGTGCGGCGTCACTTGCAAGAGAAGATCAGAGCGGTGGATTTTGAAGATGTGATCGCAGAACCTGATGGAACACACAGTCTGGACGGTGTCTGGAAGGCTAGCTACACAACCTTCACTGTTTCTAAATATTGGTGCTACAGAGTGCTGTCGGCCATCTTCGGCATCCCAGTCTCCTTGATCTGGGGCTTCCTCTTTGCTTGCATCTCTTTCTGTCATATCTGGGCCGTGATGCCATGCATCAAGAGCTACATGATCGAAACCCAGTGCATCAGCAGGATCTACTCATTGTGCATCCATACCTTCTGTGACCCCTTCTATGAGGCACTGGGCAAGATCTTCAGCAGCATTCGCGTGGCTCTCCGCAAGGAGGTTTAAATCACAGATGTCCAGGACTGCCTTGGCACATTGGGTTTTGAATTCAGAGGTCATCACTACCCCACTTGGCACATGCCCACTCACAATGCTGGAACTATCTGTCACCGAAGGCTGTCCTTCAGGAACACTGCAGTTCACCGTTTTCAATAGAAAAACAATTTCAGTTCATTTAAACTAAAGGACACTCCACAGTGGGCATTACTAATTACCATCACCATTATTTAtgatagttatttattttttgaccaCATAACTTCCTGATTAGATCTAGTATGTGAGCTTGGTCtacagaaattgaaaataagtGTGTTAAGTATAACATTTGGCCgcttgttaattaaaacaaaattgggGGTTTCGATATATACAATTTTGAAGAAATCACATCCCATGAATCCACACTCTTCATAGTTTAATTACTAGATGCAATGTGTTTAACAAAAACGTTTTCCTATTAATCAATGGTTTTCCACCAAAGTTGAATTTGTCAACTTATATCTCATAAAACAACCCACAGTAGTAACAGTGtataaaatattatgaaaatattgatgAAAATTCCAATTTATCATTTTAACACTGTATTCTATGTATCTCAGTTTTCATCTGTTCAATAGGAAAACTCttctgtatgtaaaataaatcatctgttattaaataaatatttatagttaGCAACtactaaaaaatatttatttatcttgtgtGAATGCTGTCTGTATTTGGATGTttgttacataagaacataagaaagtttacaaacgagaggaggccattcgacccatcgtgctcgtttagtgtccattaataactgagtgatccaaggatcctatccagtctatttttaaatgttcccaaattgtctcttcaaccacatcgctggggagtttcaTCCAGAtcgtgacaactctctgtgtgaagaagtgtctcctacagcttccaatttgaggatcagtctttggtgtggaaccttatcaaaagttttttgaaaatgaaaatgtaagtatatcatatcatatgctttcacatgatctacggctgtagttgcatgttcaaaaacctccaataaattagtaa

Function

GO:

id name namespace
GO:0042693 muscle cell fate commitment biological_process
GO:0007520 myoblast fusion biological_process
GO:0045214 sarcomere organization biological_process
GO:0060035 notochord cell development biological_process
GO:0042383 sarcolemma cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005901 caveola cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22537 lncRNA upstream 234972 44662389 ~ 44714164 (+) True G18186
TU22557 lncRNA upstream 277266 44671292 ~ 44671870 (+) True G18197
TU22555 lncRNA upstream 278258 44669423 ~ 44670878 (+) True G18196
TU22536 lncRNA upstream 281679 44623367 ~ 44667457 (+) False G18186
TU22471 lncRNA upstream 561187 44387443 ~ 44387949 (+) True G18127
TU22639 lncRNA downstream 24195 44985796 ~ 44986081 (+) True G18255
TU22699 lncRNA downstream 281883 45243484 ~ 45243983 (+) True G18302
TU22717 lncRNA downstream 565143 45526744 ~ 45527005 (+) True G18316
TU22733 lncRNA downstream 820596 45782197 ~ 45782467 (+) True G18330
TU22781 lncRNA downstream 1057740 46019341 ~ 46021345 (+) True G18357
AMCG00017103 mRNA upstream 14887 44933056 ~ 44934249 (+) True AMCG00017103
AMCG00017098 mRNA upstream 25502 44902466 ~ 44923634 (+) True AMCG00017098
AMCG00017097 mRNA upstream 57266 44881865 ~ 44891870 (+) True AMCG00017097
AMCG00017102 mRNA upstream 72596 44867914 ~ 44876540 (+) True AMCG00017102
AMCG00017096 mRNA upstream 209335 44715391 ~ 44739801 (+) True AMCG00017096
AMCG00017104 mRNA downstream 258513 45220114 ~ 45227676 (+) True AMCG00017104
AMCG00017113 mRNA downstream 981449 45943050 ~ 46096926 (+) True AMCG00017113
AMCG00017112 mRNA downstream 1267448 46229049 ~ 46245266 (+) True AMCG00017112
AMCG00017114 mRNA downstream 1351293 46312894 ~ 46327713 (+) True AMCG00017114
AMCG00017121 mRNA downstream 1451801 46413402 ~ 46415356 (+) True AMCG00017121
TU22550 other upstream 293038 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 817534 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 2551349 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 6445504 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10848273 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 4441118 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 4751923 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 5590279 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 5597849 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 7852652 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile