RNA id: TU22623


Basic Information

Item Value
RNA id TU22623
length 2561
lncRNA type sense_over
GC content 0.36
exon number 2
gene id AMCG00017099
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44949034 ~ 44961601 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGCAACCTCACACAAAATGTGTTACTCGTTTTTGTACATTGGGCTTTCCACAGCTGGTTTCAAAACTTGTGGCTTCAGGTTTtagtttgttcattttataGTTGGCCAGGATGATCAAGGGGGACAGTACTGAAGAAACCAAGATTGATCTTGAGGAAGTAGAGGAACAATCTGAGGATAATCCCCTCCAAGCACAAATAGACACACACCCCATGGTGGAGAAGAGAGACCCCAAAGGAGTAAACTCATACctcaagGTGCATCATGCCTTGTGTCCAAATCTGCCTTATCAATATGCACTCAATTAAAACCATCTGGGGATCAGTCTTGGACATAGCAATTTCACCTTTCTTTAAGAGTATGGGGAAATGCTGCAACGCCATCAATCTGCGTTTGGCTCGTGACTGAAAACTGAGTTCCAGTGTCTCGACTGATATCAAGTAATGGATGACCACGGATCAGTCATGGATGCTACCTACAGTCATAAAATGCATTCCACAAGGAATCAGCCCATCATTGTAGTTGTACACAAACTTTACGGTTCCCCCACTGTGTAACAtgatgtggaaaaaaatgtattgaaagaggAGGAACGAAAAACGATTTCAGTATGTTTAGAACTTCTGAACAGAGTATATACATGTTTCCCAGAAAAGGCTGTACAGACAAAGCTACCTAAACAAGATAGTCAacacttttcttctgttttaaaaacaattgaattTTTTAACGCAATGCACCTGGACTGTATTAGAGACACTCCTCCTTAAAATATAAGTGTTATTATTTCCACAAACAATGTGTTCACCTGGCCTGACAAGAAATCTTTATCTTTGAAGTGGTCTCTAATTGAGAGGGTCATGAATATTCATAAGCACAGAGGCCTATTTGTTTGTGATAGATGGGTGACAGATTGGTGGCAActcaaaacataatataatgtgtggatgatgatgatgatgatgattattattgtcatttataaTTAATGGGTAATATCAACAATACCAATGTCTTGGTGTtcaatactttttgttttgtttatggaGTAAAATTTACAGAATATCTTCCAGTGGAAAACATAAAAGAATTGTATTGTGTTGCCATAATTAAATACTGAGCATCTTTGTGGCATTAGTATTATGCTTCCTACTACTacttccaattaaaataatacaaaataattatacaaatccACACACTAGCTATTCTTTTTTGAATTGCCGCCAATCTGTCGCTTGTGTTTTGTGAACCAACCAGCCTCTGAGATCGAAGACCTTTGCTTCAGTGTTCTTGTGTGTTCATAAATATTCATTAAGCTGAAAGACAGCACTTCGGCAATAAAGTGTTCCTGTCAGGCCAGATGAAAACAttgttgaaataataacatgtatattttaaggAGGGTTGTctctaatacaatccaggtTCACAGAATGaggcaggttttccattatatagatAGGAAGTAAAGCACCACCGGAACTCCTAGcgatcccacaatgcactgtttTGCGTAAGACGGAAGTTCCCAGTTGGATCGGTGGAGTTGACTATCTTGTTTAGATATCAAATGTCTTTTACACAGTTGGGGAACTTGCTGACATGTAAGGAAGCTCCTCCCttaaaaacatctttattttccttttcaacagAAATCAGACTAATTAAACAACTCATCTCAAACATCAAATATGTGCTCTATTAGCCAAAGTATTGgtacagaatatttaaaaagatgtatatTTACAGGCTACCCTTTGGGTAGCTGGATGAGTACCATGTTATTTCTCCCAGTTTGAATGTTCCCCATTCACTGGATCAGGTCATCCCAGGGCTGTACTTTGAGACTGAAGCCAAGCCTGAAATGTCTTCCGTATTTTTCTCCCTGAACCACTATGCAGCACTCTCAGATTTTTGACCTGGTGTGTTACTTGTTTGCAGAAATAACAACCTTCACTATGAAATTCCACCAATTCTGGCACTACAAAATTGTGCACAATGTCCCAATTGTGTTTATCCCGATTACTGATGCTCATGCCTTACACAACAAGTAATCTTTACAAAGCACATGGTCCATTATAATCCATTGCTGGCAGAGGGAGGTCTAATTAATTACTTGTTGTTCTTTATACAAATAGTAACTTGTTAAAGACAGCATTTGGACTCCACcaaagaaaagtatttgttaTGGTTAGAGAGAAGTTTtatcttttaaagttaattaatttgcttGCTGCCATAAtggtatacatttataaaataaatggtttcaCCCTTGTTCATCTATATAATGCCATTGCCATCCtgtcattattaattttttgtcaccattaattttgatttgacatcccagttatttttttttatcaaatgtgttaattttttaaataatgtttatcattgggaattatacatttttttgaagTTTACATTAAAGGAATACATGTATGTACCCTGTAAAATTCTTCAAGACAATTTACTTAAGAATGATTATcggttttaaaatcaaatatttccAATAATTAATCCAATAAATTACTTAttcttaataaatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22537 lncRNA upstream 234870 44662389 ~ 44714164 (+) True G18186
TU22557 lncRNA upstream 277164 44671292 ~ 44671870 (+) True G18197
TU22555 lncRNA upstream 278156 44669423 ~ 44670878 (+) True G18196
TU22536 lncRNA upstream 281577 44623367 ~ 44667457 (+) False G18186
TU22471 lncRNA upstream 561085 44387443 ~ 44387949 (+) True G18127
TU22639 lncRNA downstream 32832 44985796 ~ 44986081 (+) True G18255
TU22699 lncRNA downstream 290520 45243484 ~ 45243983 (+) True G18302
TU22717 lncRNA downstream 573780 45526744 ~ 45527005 (+) True G18316
TU22733 lncRNA downstream 829233 45782197 ~ 45782467 (+) True G18330
TU22781 lncRNA downstream 1066377 46019341 ~ 46021345 (+) True G18357
AMCG00017103 mRNA upstream 14785 44933056 ~ 44934249 (+) True AMCG00017103
AMCG00017098 mRNA upstream 25400 44902466 ~ 44923634 (+) True AMCG00017098
AMCG00017097 mRNA upstream 57164 44881865 ~ 44891870 (+) True AMCG00017097
AMCG00017102 mRNA upstream 72494 44867914 ~ 44876540 (+) True AMCG00017102
AMCG00017096 mRNA upstream 209233 44715391 ~ 44739801 (+) True AMCG00017096
AMCG00017104 mRNA downstream 267150 45220114 ~ 45227676 (+) True AMCG00017104
AMCG00017113 mRNA downstream 990086 45943050 ~ 46096926 (+) True AMCG00017113
AMCG00017112 mRNA downstream 1276085 46229049 ~ 46245266 (+) True AMCG00017112
AMCG00017114 mRNA downstream 1359930 46312894 ~ 46327713 (+) True AMCG00017114
AMCG00017121 mRNA downstream 1460438 46413402 ~ 46415356 (+) True AMCG00017121
TU22550 other upstream 292936 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 817432 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 2551247 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 6445402 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10848171 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 4449755 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 4760560 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 5598916 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 5606486 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 7861289 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile