RNA id: AMCG00017100



Basic Information


Item Value
RNA id AMCG00017100
length 1173
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00017100
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44967273 ~ 44977924 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGGATGTGCCCTTGAATGAGCTGTGGTCTCTGAACGCGTCCGTGGAGAACTCCAGCCTGGCCGGCGCGCCCGCAGGGGGGAACGGCTCCGTGGGTCCCGTACGGCGCAATGAGGAGGTGGCCAAGGTGGAGGTGACCGTGCTGGCCCTGATCCTGTTATTGGCACTGGCGGGCAACCTGTGTGTCCTCCTAGCTATCTACACGACGAAAAACAACCAGTCTCGGATGTACTTTTTCATGAAACACCTCAGCATCGCAGACCTGGTTGTGGCTATCTTTCAAGTCTTGCCGCAACTGATCTGGGACATCACATTTCGGTTTTACGGACCCGACTCTCTTTGCAGATTGGTAAAGTATCTGCAAGTGGTGGGCATGTTTGCATCGACATATATGCTGGTTTTGATGTCCATAGACAGATGTTTGGCCATATGCCAACCTCTGCGCTCTTTACACAGGAGAGCCGACCGTCTGTACGTCATTTCTTCCTGGGTCCTCAGCCTTTTGTTCAGCATTCCTCAGGTGTATATATTCTCTCTGAAAGAGGTGCCAGTCGGCTCCGGGGTGTATGATTGCTGGGGAGATTTCATCCAGCCCTGGGGAATGAAGGCGTATGTAACCTGGATCAGCCTCACCATCTATATCATTCCAGTGGCCATACTGAGCATCTGTTACGGACTGATCAGCTTTAAAATATGGCAAAAcgttaaactgaaaacaaggaAGGACTACGGTGTCACAGCGGCACAGAAATCCTCAGAGGGGTTAGTGCTCTCCCGGGTGAGCAGCGTCAAGCTCATCTCAAAAGCCAAGATCAGAACCGTGAAAATGACTTTCGTCATCGTCCTGGCTTACATCGTTTGCTGGACGCCTTTCTTCTTCGTGCAGATGTGGTCAGCGTGGGACCCAGCAGCCCCCAGAGAAGCATTAGCGTTCATCATTTCTATGTTGCTGGCCAGCTTGAACAGTTGTTGTAACCCCTGGATTTACATGTTCTTTGCTGGGCACCTTTTCCACGACATGATGCATCGCTTCCTCTGCTGCTCCACACACTATCTGAAATCCTCCCAGTGCAACTGTGAGCGCAACTCCAGCCGCAAGAGCAACTCGTCCACCTACATCATCAAAAGCACGAGCAGCCAGAAGAGCATCACACAGACATCCACGACATGA

Function


GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004990 oxytocin receptor activity molecular_function
GO:0005000 vasopressin receptor activity molecular_function

KEGG:

id description
K04229 OXTR; oxytocin receptor

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU22596 lncRNA downstream 138247 44799454 ~ 44829026 (-) True G18219
TU22583 lncRNA downstream 311279 44653455 ~ 44655994 (-) False AMCG00017091
TU22511 lncRNA downstream 579278 44387443 ~ 44387995 (-) True G18164
TU22503 lncRNA downstream 590052 44376997 ~ 44377221 (-) True G18156
TU22443 lncRNA downstream 828731 44136188 ~ 44138542 (-) True G18101
TU22678 lncRNA upstream 140366 45118290 ~ 45151671 (-) False AMCG00017105
TU22760 lncRNA upstream 875138 45853062 ~ 45916620 (-) True G18352
TU22790 lncRNA upstream 1124036 46101960 ~ 46102188 (-) True G18364
TU22792 lncRNA upstream 1124338 46102262 ~ 46106593 (-) True G18366
TU22837 lncRNA upstream 1462145 46440069 ~ 46454396 (-) True G18405
AMCG00017101 mRNA downstream 65877 44892111 ~ 44901396 (-) True AMCG00017101
AMCG00017092 mRNA downstream 275324 44685616 ~ 44691949 (-) True AMCG00017092
AMCG00017093 mRNA downstream 282394 44662419 ~ 44684879 (-) True AMCG00017093
AMCG00017091 mRNA downstream 310368 44653734 ~ 44656905 (-) True AMCG00017091
AMCG00017095 mRNA downstream 315424 44640087 ~ 44651849 (-) True AMCG00017095
AMCG00017106 mRNA upstream 82050 45059974 ~ 45068123 (-) True AMCG00017106
AMCG00017105 mRNA upstream 141761 45119685 ~ 45161137 (-) True AMCG00017105
AMCG00017107 mRNA upstream 267137 45245061 ~ 45257864 (-) True AMCG00017107
AMCG00017108 mRNA upstream 315735 45293659 ~ 45305316 (-) True AMCG00017108
AMCG00017109 mRNA upstream 645202 45623126 ~ 45647218 (-) True AMCG00017109
TU22128 other downstream 2102657 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 3750042 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 6908334 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 6908334 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 7208802 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 3511203 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 6452931 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 6467663 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 6467663 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 6878322 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile