RNA id: AMCG00017103



Basic Information


Item Value
RNA id AMCG00017103
length 1194
RNA type mRNA
GC content 0.47
exon number 1
gene id AMCG00017103
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44933056 ~ 44934249 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGCTAGGGGGTTTACCCAACACACAGTCCAAATTCAAAGACCTTGTTGGAATATTCTTCATGGTGTCATTGAACATCGTCGCACTCTTGGCCAACACGGCAGTAATGGTGGTCATCATCAAAGCACCACAGCTCAGGAAGTTTGCTTTCGTTTGCCACCTGTGTGTAgtagaccttttatctgctgTGTTCCTGATGCCTTTGGGTATAGTTTCCACTTCCTCCTTTTTTGGGAAGGTTGCATTCAGTGCACTAGAATGCCAGGCTTACATATTCCTCAACGTCTGCCTGATTTGTGCCTCAATTCTCACGATAACGGCCATCAGCATTGAACGGTATTACTATATAGTGCATCCAATGAGGTACGAGGTGAAAATGACACTCAGCTTAGCTGTAGCCGTGATGATTTTCATCTGGGTCAAGTCCATTTTATTGGCATTCATTCCCTTGCTGGGATGGCCCACATACGGTAACCAAAGCCCGACAAACGCAGCCCAGTGCTCCCTGTATTGGAGCCACAGTGACTATAAAAAAGCTTTTGTCATCATCTTCAGCATCCtctgttttttccttccttcaaTTATCATCTTCACAGTCTACTGCAATGTCTACAAAGTGGCACGAATTGCAGCCCTACAGCACGGACCCATCCCCACCTGGACTACTAGTCCTAAAAGGCGCTCAGACTCCATCAATAGTCAGACAACCATTATCACAACCAGGAACCTTCCTCAAAGGCTGTCCCCTGAGAGAATCTTTGGGGGAGGCAAGGCCGCCTTTACTCTGTTTACCATCGTAGGTCAGTTTCTTCTCTGCTGGCTgccttatttttctttccacctCCACTTATCAGTACATAAAGCACTCAAAAGCCCAGGGGACATTGAGATTGTGGTTACCTGGCTTGCCTACTCCTCTTTTGCCATTAACCCATTCTTCTATGGACTGCTAAATCGACAGATTAGAGAAGAATTGTGTAAACTCAGACGGTGCTACATGACAAGGCCTACAGAGCTTGGCGTGTCTAGTCACGAAGGATCCATCCAAGAGAATTTCCTCCAGTTTTTACAGAGGACCAGCTGCACGGTGGAAACGAGGTCGAGCTACATCAATTCCAGCCCCAGAAATACTCTCGACCAGACGGTGCAAGGCTTCCAAATCCCTGGACAAATCCCAGAAGAGTTCACTTAA

Function


GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU22537 lncRNA upstream 218892 44662389 ~ 44714164 (+) True G18186
TU22557 lncRNA upstream 261186 44671292 ~ 44671870 (+) True G18197
TU22555 lncRNA upstream 262178 44669423 ~ 44670878 (+) True G18196
TU22536 lncRNA upstream 265599 44623367 ~ 44667457 (+) False G18186
TU22471 lncRNA upstream 545107 44387443 ~ 44387949 (+) True G18127
TU22623 lncRNA downstream 14785 44949034 ~ 44952964 (+) True AMCG00017099
TU22639 lncRNA downstream 51547 44985796 ~ 44986081 (+) True G18255
TU22699 lncRNA downstream 309235 45243484 ~ 45243983 (+) True G18302
TU22717 lncRNA downstream 592495 45526744 ~ 45527005 (+) True G18316
TU22733 lncRNA downstream 847948 45782197 ~ 45782467 (+) True G18330
AMCG00017098 mRNA upstream 9422 44902466 ~ 44923634 (+) True AMCG00017098
AMCG00017097 mRNA upstream 41186 44881865 ~ 44891870 (+) True AMCG00017097
AMCG00017102 mRNA upstream 56516 44867914 ~ 44876540 (+) True AMCG00017102
AMCG00017096 mRNA upstream 193255 44715391 ~ 44739801 (+) True AMCG00017096
AMCG00017090 mRNA upstream 218956 44692983 ~ 44714100 (+) True AMCG00017090
AMCG00017099 mRNA downstream 14887 44949136 ~ 44961601 (+) False AMCG00017099
AMCG00017104 mRNA downstream 285865 45220114 ~ 45227676 (+) True AMCG00017104
AMCG00017113 mRNA downstream 1008801 45943050 ~ 46096926 (+) True AMCG00017113
AMCG00017112 mRNA downstream 1294800 46229049 ~ 46245266 (+) True AMCG00017112
AMCG00017114 mRNA downstream 1378645 46312894 ~ 46327713 (+) True AMCG00017114
TU22550 other upstream 276958 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 801454 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 2535269 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 6429424 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 10832193 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 4468470 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 4779275 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 5617631 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 5625201 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 7880004 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile