RNA id: AMCG00017104


Basic Information

Item Value
RNA id AMCG00017104
length 3013
RNA type mRNA
GC content 0.39
exon number 10
gene id AMCG00017104
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 45220114 ~ 45227676 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCGACCTGGTTGTATACAGTCCCTCGGTTACACACAGTGGCAGGATAGGAGGGATTAGTGTGAAAAGGCCATCCAGAACCACAATGTCAACCCAACAGGAAGAAGGCATTGGACACCAGTGCCAGGGGAACCCGCAGGAAGACAGTAACAACACTGCACTTCTGTCACACAACCTAGAGAAACTTACTACTGAGCAAACTACAGACCCAATTAGTGTCACTATTGGAGCAACAGTTCCCACTGGGTTTGAGCTCACTGCTGCAgaggaaataaaggaaaagatAGGTGCTGATGCAAGGATAAGCAAAGACCGTGGTAGAATATACTTCAAAATAACTCTTGAAAATCTACCTCAGCTTCATCACCTGAAGTCTGTAGACAACTTATTTGTTGTGGTTGAGGAGTTTTCGGAATATGAGTTTAAAGACACAAAGGAGGAAACGTTGGAGGACTTCCAGACGCTTGCTGCTAAGCTCCCATGGACATGTGCACTTGAGGTGTGGAAAATGAACAACTCTTTAAAGAAGAAGAGAACCCGACGAAAAATGGGCAAAGAGGCCGCATCTCCCAAAGGAGCCCCAGACACTGCAAGTGCAGAAAACTGCAATGCAGAGTCTCCGACTGCGATacacgagagagagagtttgGATCCAAAGACAGCAGAGACTGGTAATCATCAGGAGAAGTCAAAACAGGATGAGGAAGTGTCTACTGAGGTGCCTGAACTTGATAACGACTGTGAAGTTTCTGAGGAAGAAGAATCCTCTAAACTTCTGAAGTTTCGTGTGACTTGCAACAGGGCaggggaaaaacacaattttacttCAAACGATGCTGCAAGGGATTTTGGGGGAGCTGTGCAAGACTTCTTCCAGTGGAAGGCCGATATGACTAAGTTCGATATTGAGGTGCTCCTAAATATCCACAACACTGAGGTGGTTATTGGCATTGCACTGACAGAAGAGAGTCTCCACAGAAGAAATATAACTCATTTCGGCCCAACAACCCTGAGATCCACCCTTGCGTATGGAATGCTCAGGCTTTGTAAACCCCAGATGTCAGATGTTGTAATTGATCCGATGTGTGGAACTGGAGCTATACCTCTGGAGGGAGCTATTGAGTGGCCATATTCCTACTACGTGGCTGGAGACAACAATGGAATGGCTGTGAACCGGACTGTGAATAATATAAATCACATCCAtaagaaaaggcaaaacaagaaaagTACAGCTTGGGGTCTATGTATAGACACGGTCCAGTGGGACTTGTGCAATCTTCCTGTGAGGACAGGCTCTGTGGATATTATTGTGACAGACATGCCTTTTGGAAAGagAATGGGTTCTAAAAAGAAGAACTGGGATCTCTATCCCTCCTGCCTTAAAGAAATGGGTCGTGTCTGTAGGCCTGGAACAGGAAAGGCGGTGCTGTTAACCCAGGACAAGAAATGCTTTGCCAAGgcTCTGTCGAAGATGGGATACCTGTGGCGGAAGTCCCAGACAGTGTGGGTGAATGTAGGTGGGCTCCACGCGGCTGTCTATCTCCTGAAACGTACTGGGTTTTGTTTTAGCAAGATGTCAGAAGAATTTTCTGAGAATAAGGACCTGGTTGATGAAATTAGGGatgaggaaaaataataaatacattttgaaatggtaaCATTTCTCATGTCCAGGTCTGGGAGAAAAGCATGTACCATATGAAAAGTGCCTGTTCCTGACATTCACATAAAAAAGGTTGTGAAATCTCAAAAGAAATCAATTTCACATGCATTTAACAGGAAATGTGGAATTACTCAGTTAAGTGCcattacagtaaatacatgATTCTTTGAACATATGCATTCCTACAGTAtcattagatttgttttcagatgcaAACACTTCAAGAAAGAGCGGATCCTTGCACTAATACAGGATTTCAGGGCTTTTTAAGAGAAACCACAGTTACTACTGCTACTTTGGCCAGTggcattgtattttgtaaaattaatttattaaagttgTTTTGTATCATTTAATGTGTAATAAGTATTAAGAGATTTCTTGAATGTTATTTGTAAGATTTTTACATAACTCAAGCTTTGCAGTTGAGTTGTTTGGATTATTAAAACCTATATTActgatagaaaaaataaaaatgttagcTATTTAGAATAATGGGGTCCTGTTGTTCAGTATAGAATATTGAAGATGAATGCTGATGCTTTAAAGGAACTTGCTGGTTTGTGAATTACTTCAGCATTTATTACTTCATGCTTTCAAGAATGAacaaattctttaaaaataaatactgtactaGTCTATACAAATCTGCAATAGTTAACAGTACCCTGTGGTATAActaactgaaaacatttctgttcagttgaactttgttttacatttagttcatgttttacatttaattcatgtTCTCATTTTGAGAATTGAGTTTTCTCAAACTCAAAGGCCTGTGAAAGTGTGATTTGGCATTTCTTGTACTTcctatttaataaaaatgttcaggggaaaatcattttgtttttataatttgcatGTATCTGGTGTtagatatatacacagatgaacacacacacacgtgcacatatatatatatatatatatatatatgtctcaAAGCAAGCatactcatttattttgttgaatgGCTGGTATGGTATAACTCCAAAATATTCAGCATGGTTGtagttacatttattaaaaccatAAGATATGGACATGCTAATGCACCAGTCCAGATGTAGTAAATCCCTACCAACacaaaaattatttaaaaaaataaattaactatgcaCACTCAGCAATTGCTGcaagtttaaaattatttattgaattgaacaGGCGTACACAATCTGTTAACTTTTACTCCTGATTGTTCAACAGGTGGGTGACTTAATTATGCAGTTTTCCTACATGATTTCAAATGCTTCCACACCTGTAGAAAAAgtacatatattgtatttacagtattacATGTATTTGCACAATTATGCAATAAACACTTTGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22639 lncRNA upstream 234033 44985796 ~ 44986081 (+) True G18255
TU22623 lncRNA upstream 267150 44949034 ~ 44952964 (+) True AMCG00017099
TU22537 lncRNA upstream 505950 44662389 ~ 44714164 (+) True G18186
TU22557 lncRNA upstream 548244 44671292 ~ 44671870 (+) True G18197
TU22555 lncRNA upstream 549236 44669423 ~ 44670878 (+) True G18196
TU22699 lncRNA downstream 15808 45243484 ~ 45243983 (+) True G18302
TU22717 lncRNA downstream 299068 45526744 ~ 45527005 (+) True G18316
TU22733 lncRNA downstream 554521 45782197 ~ 45782467 (+) True G18330
TU22781 lncRNA downstream 791665 46019341 ~ 46021345 (+) True G18357
TU22789 lncRNA downstream 873390 46101066 ~ 46101623 (+) True G18363
AMCG00017099 mRNA upstream 258513 44949136 ~ 44961601 (+) False AMCG00017099
AMCG00017103 mRNA upstream 285865 44933056 ~ 44934249 (+) True AMCG00017103
AMCG00017098 mRNA upstream 296480 44902466 ~ 44923634 (+) True AMCG00017098
AMCG00017097 mRNA upstream 328244 44881865 ~ 44891870 (+) True AMCG00017097
AMCG00017102 mRNA upstream 343574 44867914 ~ 44876540 (+) True AMCG00017102
AMCG00017113 mRNA downstream 715374 45943050 ~ 46096926 (+) True AMCG00017113
AMCG00017112 mRNA downstream 1001373 46229049 ~ 46245266 (+) True AMCG00017112
AMCG00017114 mRNA downstream 1085218 46312894 ~ 46327713 (+) True AMCG00017114
AMCG00017121 mRNA downstream 1185726 46413402 ~ 46415356 (+) True AMCG00017121
AMCG00017120 mRNA downstream 1188721 46416397 ~ 46419842 (+) True AMCG00017120
TU22550 other upstream 564016 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 1088512 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 2822327 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 6716482 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 11119251 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 4175043 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 4485848 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 5324204 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 5331774 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 7586577 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile