RNA id: TU22678


Basic Information

Item Value
RNA id TU22678
length 2272
lncRNA type sense_over
GC content 0.32
exon number 2
gene id AMCG00017105
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 45118290 ~ 45161137 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatatgtataactaTGCAATATTCCTTTTAAAGTTCTTCACAAagtagtaaaacaaataaagaaccAATAGATGCTATCTGTGACTCACAGGATGATTGCCCATACTTGTCTCACAAGCATACATTTTTACTTCATGATAATTATTCATGGTTATTAGACGTTTTCAGTTAGtcggtttttcttttttctttttaaataatttacatacatttgtatataccTTGCTGTGAGTACATtactttgaggaaaaaaacattgtatatcaTTTTGATATTTGTATTGGGGAGTGGGAGCTTTAAAAATGACTTAATTACACATTGTTTCTCATGAAATATCTAATTCTATGATGATTTTTTCTCTTAGAAAAGGGGATTGCAAAAACTAGTAGACATGTGACACTCTAGTGGCAAGCAGCAGTATTGCACCCGTTTCtgcatgaatacaaaaataatttcacattctGCTCATATACTGACCCAACCACAAGCAGATATTTTGATCATTATattagtattgaaaaaaaatagcaatagattattttgaaagaatgttACTATAATTATGTTACTgcattatgtataaataatgttagTGCAATTATGAAGCACATCTCCAGCCATCTCTTGGGGGAAGTCAAAactttttcctgatttctacAAACTAACTACAAACACAGTACGTAAAAACAGAGCTTcataaaactgaaagcacaggttgtttttgtttttaatgtataaaggAAGCTGaaccttaaaaataatgatactgtattgttaaaattcattgttactgtagtattttgctaatttattgcctttttaattttttgagaagtattttttaaaagtgccttttgtgcacaaaattagtttttaaagaaCTTAAAATAGATTACTTTTTTAAAACTACAGTGTATATGGTCAGTCATGTTTGAATGCTGTGGTcaatgatgttttcttttttttgtttttcttttttcttcggATCTCTCATTGCTTCAAAATCTTTAATGTCACTATTCATGCATCAGCTGAAggataaattatttaaatctgttacATAATGAGTCATGTTGAAACACTTTAATTCTCTGGTTATCAGAGCAAATGACTGAAGACTGGAAGGAAAAGTAACAACAGTGCATGAAACTACCACTTAAAAAACTACTGTATTGAAAAGATGTTAACATTAATGGCATTCTGTAGTATTCCTCAGGCAAAGTAACAATATGTagccttttaaacattttctgtaacaaCTTCCTTACATATGGACAATCCATCGAATTTCTCTGCTTTGAAGTGAACCCAAAATTACAAATTCTCCCTCCTCACGTGTGCTGTGGGAGGATAGGACTGGATTAATCAATACAGAAATTCCTCATTTGTAACTTTTCGTGCTGTCTCTGTGGGACTTCCACTGTGTGCATCATTCCACTATGCATCAATATTTTAACCTAACTGGCTCTCCAGAGGGATCGAAAGTATGTTggttaagtttgtttttaaaacattgattgCCAACTTGCACAGAAGTGACTGCACAAAAATGGTAGACATTACAACTCCCTGCCACATGAATGTAAGATCTGGAGAAAAGCAATTCAATTCTGTCATTATGTTTCAAAGGCTAAAGCAGTCATAAGgaagatatttatatattttatgttttaaagctttttgaGTCCTGCTGCTCTGTTACCCATCCAAATTAAGCCGGTTTCTTAAATGTGGTCCTCTTTTTCATGAAATAGACAGTCTGCTTTGAAAAGGTTGATATGGTGTGAAATTTGCTTTTCACAATTCCATTACACCAGTTTGATGCATTGCAGTATTTTATGCACAATGGGCTTGTTTAAAAACCTCTAATTGCACAGTAGCAGGCATTAGTGCACTTTTCTTCTCTTAACTATACGTAACATATAGGGTGTGTATTAATTTAAggaatgtatattaaaataggattattgtatttaaaggaTATGAGAGAATACTTCTTGGCTAATGTTACAAGCTTGTCATCAGCTCATGCCTGGAGTAGCCAGATCTTtatatgcagaaaaaaaaaaaaaaaaacagctgtccTATGATGTTGggtgttattttcaattatattcCTTCCTGTAATGTCTAATGATCTTCATTAATGAGTGTCTGATTGAATcttctgtaatgtaatgtaaaccaAGCCACTGGTTGGATGTTGAGAATCCTAATGtccaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22596 lncRNA downstream 289264 44799454 ~ 44829026 (-) True G18219
TU22583 lncRNA downstream 462296 44653455 ~ 44655994 (-) False AMCG00017091
TU22511 lncRNA downstream 730295 44387443 ~ 44387995 (-) True G18164
TU22503 lncRNA downstream 741069 44376997 ~ 44377221 (-) True G18156
TU22443 lncRNA downstream 979748 44136188 ~ 44138542 (-) True G18101
TU22760 lncRNA upstream 701391 45853062 ~ 45916620 (-) True G18352
TU22790 lncRNA upstream 950289 46101960 ~ 46102188 (-) True G18364
TU22792 lncRNA upstream 950591 46102262 ~ 46106593 (-) True G18366
TU22837 lncRNA upstream 1288398 46440069 ~ 46454396 (-) True G18405
TU22851 lncRNA upstream 1411423 46563094 ~ 46563573 (-) True G18419
AMCG00017106 mRNA downstream 50167 45059974 ~ 45068123 (-) True AMCG00017106
AMCG00017100 mRNA downstream 140366 44967273 ~ 44977924 (-) True AMCG00017100
AMCG00017101 mRNA downstream 216894 44892111 ~ 44901396 (-) True AMCG00017101
AMCG00017092 mRNA downstream 426341 44685616 ~ 44691949 (-) True AMCG00017092
AMCG00017093 mRNA downstream 433411 44662419 ~ 44684879 (-) True AMCG00017093
AMCG00017107 mRNA upstream 93390 45245061 ~ 45257864 (-) True AMCG00017107
AMCG00017108 mRNA upstream 141988 45293659 ~ 45305316 (-) True AMCG00017108
AMCG00017109 mRNA upstream 471455 45623126 ~ 45647218 (-) True AMCG00017109
AMCG00017110 mRNA upstream 510963 45662634 ~ 45665661 (-) True AMCG00017110
AMCG00017111 mRNA upstream 715356 45867027 ~ 45899846 (-) True AMCG00017111
TU22128 other downstream 2253674 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 3901059 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 7059351 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 7059351 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 7359819 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 3337456 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 6279184 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 6293916 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 6293916 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 6704575 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile