RNA id: AMCG00017108


Basic Information

Item Value
RNA id AMCG00017108
length 702
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00017108
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 45293659 ~ 45305316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGAATATGAACCAAAGATAGAAGTTCAGTTTCCAGAGATTGTTCCTGCTGCCAAAGGATCAACAGTAAAATTGGAGTGTTTTGCCCTGGGAAATCCAGTTCCGGCTATAAGCTGGAGGAGAGCTGATGGTCTCCCTTTTTCAAGAACTgtggaattaaataaatccagtgGACTTCTTGAAATCCCATATTTTCAGCAAGAGGATGCCGGTTTATATGAATGTGTTGCAGAGAATACTAGAGGGAAGAATGTTGCGAAAGGGAGACTGACTTTCTATGCCCCTCCTCACCTGATTGAAAAACTTCAGGATGTCCATAAAACCATAGATGATAACTTGGTCTGGGAATGTAAAGCAAGTGGAAAACCAAAGCCCTCCTACAGATGGCTGAAGAATGGAGAGCCCCTGGAACCATTAGAGGAAAGACTTCAGGTTGTGAATGGGGCCTTGACCATCACCGGCTTGACCCTCTCTGACTCGGGGATGTACCAGTGTGTTGCTGAGAATAAACACGGACAGATATATACCAATGCCGAATTAAGAGTAATAGCAATAGCCCCTgatttttcacaaaatgtgttgAAGATACAATCCCTGGTCAGGGAAGGAGGGAACGTTGTCATTGAGTGCAAGCCCAGAATGTCTCCCAGAGGAATGATCTTGTGGAGAAAAGGAAGCGAAGCACTGAGAGAAAATCag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22678 lncRNA downstream 141988 45118290 ~ 45151671 (-) False AMCG00017105
TU22596 lncRNA downstream 464633 44799454 ~ 44829026 (-) True G18219
TU22583 lncRNA downstream 637665 44653455 ~ 44655994 (-) False AMCG00017091
TU22511 lncRNA downstream 905664 44387443 ~ 44387995 (-) True G18164
TU22503 lncRNA downstream 916438 44376997 ~ 44377221 (-) True G18156
TU22760 lncRNA upstream 547746 45853062 ~ 45916620 (-) True G18352
TU22790 lncRNA upstream 796644 46101960 ~ 46102188 (-) True G18364
TU22792 lncRNA upstream 796946 46102262 ~ 46106593 (-) True G18366
TU22837 lncRNA upstream 1134753 46440069 ~ 46454396 (-) True G18405
TU22851 lncRNA upstream 1257778 46563094 ~ 46563573 (-) True G18419
AMCG00017107 mRNA downstream 35795 45245061 ~ 45257864 (-) True AMCG00017107
AMCG00017105 mRNA downstream 132522 45119685 ~ 45161137 (-) True AMCG00017105
AMCG00017106 mRNA downstream 225536 45059974 ~ 45068123 (-) True AMCG00017106
AMCG00017100 mRNA downstream 315735 44967273 ~ 44977924 (-) True AMCG00017100
AMCG00017101 mRNA downstream 392263 44892111 ~ 44901396 (-) True AMCG00017101
AMCG00017109 mRNA upstream 317810 45623126 ~ 45647218 (-) True AMCG00017109
AMCG00017110 mRNA upstream 357318 45662634 ~ 45665661 (-) True AMCG00017110
AMCG00017111 mRNA upstream 561711 45867027 ~ 45899846 (-) True AMCG00017111
AMCG00017116 mRNA upstream 1067150 46372466 ~ 46382868 (-) True AMCG00017116
AMCG00017115 mRNA upstream 1081102 46386418 ~ 46403301 (-) True AMCG00017115
TU22128 other downstream 2429043 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 4076428 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 7234720 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 7234720 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 7535188 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 3183811 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 6125539 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 6140271 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 6140271 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 6550930 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile