RNA id: AMCG00017109


Basic Information

Item Value
RNA id AMCG00017109
length 2610
RNA type mRNA
GC content 0.44
exon number 18
gene id AMCG00017109
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 45623126 ~ 45647218 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAACGTATTCATGGATTTTTAATGAGCACCCTAACTTTGTACAGCAGGACAATCGTCGATTTGTGTCTCAGAAAACGGGAAACCTTTACATAGCAAAAGTTGAAGCATCAGACGTGGGAAACTATACCTGTGTGGTGAGAAATGTCATAACCAACGCCACAGTTTTGAGTTCCCCCACACCTGTAGTATTGCGAACTGACGCTGTGATGGGAGAATATGAGCCAAAAATAGAAGTTCAATTCTCAGACACAGTATCTGTTGCAAAAGGATCATCAGTAAAGCTGGAATGCTTCGCCTTGGGAAACCCGGTTCCTGTCATAACATGGAGAAGAGCAGATGGTAATCCTTTCCCTGGCAAGGTCAAAATAAACAGCTCCAACGGAGTGCTTGAAATCCCATATTTCCGACCAGAAGATGCAggtttatatgaatgtattgcTGAGAACTCAAGAGGAAGAAATGTTGCAAAGGGAAGGTTGATCTTTTATGATGTTGAATATTTGCATTGGATTCAGACATTGAAAGATGCCTATATGTCCATTGAAGACACTCTTTTCTGGGAATGCAAAGCAAGTGGAAAGCCAAGGCCTACATACAAGTGGTTGAAGAATGGGGAGCTCTTGGTATTGGAGGTGAGAGTTTCTCCTAGCCATGACATATTGGTGTTGACCAGGAAAGCAATTGACCTGGGAAATGTGACATGTAACATGGACCGAATTCAAGTAGAAAACGGAAAACTAACCATTACAAACCTCAGTTTAATGGATTCTGGGATACATGTTCGTTGTGTCTCAGCTTTACCACCAGATTTTTCCAAAAACCCAGTGAGGAAAACCACACTGATTCAAAAGGGAGGTGAAGTCATAATTGAATGCCGACCAAAAGCATCACCAAGAGCTTCATTCTCTTGGAAGAAGGGCACTGAATTTGTTCAAGAAAGTAAGAGGATGGCTATCTTAGAGGATGGAAGTCTCAGAATCACCAATATTACTAAATCTGATGGCGGAAGATATACTTGCGTTGCCCGAAACCCATTTGGATCCTCCAGCAGCACAGGAAATTTGGTGGTGAAAGAACCTACAAAGATCACAGTCCCACCATTGAGCATGGATGCCACAGTAGGGGAAAGCATAGTCCTTCCTTGTGAGGTGTCCAAAGATTCTTCATTAGATCCCACTTTTAAGTGGTTTTTCAATGGGAAGCTGATAGATTTCAACAGACAagatcattttgaaaaaattgGAGGAGGTGCTGCTGGTGACTTAATGATCAGAAATATTCAACTCAAACATGCAGGAAAATATGTCTGCATGGTCCACACAGTTGTAGATAGTgtgtcagcagcagcagatcTGATTGTAAGAGGACCCCCAGGTCCTCCAGAGAATCTGATTGTCGAAGACATTACTGACACAACCGCACAGCTTTCCTGGGGACCAGGTACTGATAATCGCAGCCCTGTTAACACCTACACAATACAAGCAAGGACACCCTTTTCAATAGGATGGCAGGCAGTTAAAACAGTTCCTGAATCTATACCTGGGAAGATGTTGAGAGCAAGAGTAATAAATTTAAACCCTTGGGTGGATTATGAATTCCGGGTGGTAGCAGGCAACAGTGTTGGGATTGGAGAGCCGAGCGCCCCTTCAAAGCAGTTCCGAACAAAAGCAGCAGTTCCTGAAGTTGCTCCAGCCAATGTTAGCGGTGGTGGAGGAAGCCGATCTGAACTTGTCATTGTATGGGAGCCTGTTCCAGAAGAGCTACAGAATGGCGAAGGATTTGGATATGTGGTTGCTTTTCGACCCATGGGCACAACAACATGGATGCAGACAGTGGTGGCTTTAGCAGATGCCTCAAgatatgtgtttaaaaatgacagtATTCCACCACTTTCTCCATTTGAAGTCAAAGTTGGGGTCTACAATAACATTGGCGAAGGCCCATTCAGCCATGTAACCAAAGTCTATTCGGCAGAGGAAGAACCAAATATGGCACCATCTAGAATATTTGCAAGAAGCTTATCGGCTTCGGAAATTGAAGTCTACTGGGAACCTGTCCCCTGGAAAGCTAGCAATGGAAGAATTTTGGGTTATGAGATACTATACTGGGAAGATGGCGAAATGGAAAAAGAAGCAGAGAAGATCAGAGTAACAGATACATCTTCAAACATTACGGGGCTAAAGGGaagcacaatgtatttaattgcagtCAAGGCACATAACAGTGCTGGAACAGGACCTTCCAGCGCCCCAGTAAATGTTACCACCAAAAAGCCACcacCGAGTCAACCGCCTGGGAATATTGAATGGAACTTGACAAATTCAAAGATCTTTTTGAATTGGGAGCATGTGAAGGCAATGGAAAATGAGTCAGAGGTGATTGGATACAAGGTTGTGTATCGTCAGAACTGGCACAGCAGGACAAACGTTGTTGAGACTAATAAAACATCAGTGGAGCTACAGCTGCCATCGGGGGAGGACTACCTCATAGagataaaaacattcagtgATGGCGGAGATGGCATTAGCAGTGGGCCAATCAGGATCCCAAAGATGCAAAgccTGAATTCAAAAGGACTTTCCAATGCTTTTATATCTGATGTCAGCAAA

Function

GO: NA

KEGG:

id description
K06762 CNTN4; contactin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22678 lncRNA downstream 471455 45118290 ~ 45151671 (-) False AMCG00017105
TU22596 lncRNA downstream 794100 44799454 ~ 44829026 (-) True G18219
TU22583 lncRNA downstream 967132 44653455 ~ 44655994 (-) False AMCG00017091
TU22511 lncRNA downstream 1235131 44387443 ~ 44387995 (-) True G18164
TU22503 lncRNA downstream 1245905 44376997 ~ 44377221 (-) True G18156
TU22760 lncRNA upstream 205844 45853062 ~ 45916620 (-) True G18352
TU22790 lncRNA upstream 454742 46101960 ~ 46102188 (-) True G18364
TU22792 lncRNA upstream 455044 46102262 ~ 46106593 (-) True G18366
TU22837 lncRNA upstream 792851 46440069 ~ 46454396 (-) True G18405
TU22851 lncRNA upstream 915876 46563094 ~ 46563573 (-) True G18419
AMCG00017108 mRNA downstream 317810 45293659 ~ 45305316 (-) True AMCG00017108
AMCG00017107 mRNA downstream 365262 45245061 ~ 45257864 (-) True AMCG00017107
AMCG00017105 mRNA downstream 461989 45119685 ~ 45161137 (-) True AMCG00017105
AMCG00017106 mRNA downstream 555003 45059974 ~ 45068123 (-) True AMCG00017106
AMCG00017100 mRNA downstream 645202 44967273 ~ 44977924 (-) True AMCG00017100
AMCG00017110 mRNA upstream 15416 45662634 ~ 45665661 (-) True AMCG00017110
AMCG00017111 mRNA upstream 219809 45867027 ~ 45899846 (-) True AMCG00017111
AMCG00017116 mRNA upstream 725248 46372466 ~ 46382868 (-) True AMCG00017116
AMCG00017115 mRNA upstream 739200 46386418 ~ 46403301 (-) True AMCG00017115
AMCG00017122 mRNA upstream 836719 46483937 ~ 46607444 (-) True AMCG00017122
TU22128 other downstream 2758510 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 4405895 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 7564187 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 7564187 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 7864655 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 2841909 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 5783637 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 5798369 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 5798369 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 6209028 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile