RNA id: AMCG00017110


Basic Information

Item Value
RNA id AMCG00017110
length 378
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00017110
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 45662634 ~ 45665661 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacacactgcaTGGACCAGTCTTCACACAAGAGCCAAGTGATATTATTTCCCCCTTGAATTCCGAGGACAATAGGATTTTTATCAATTGTAAGGCTAAGGGAAACCCAGTTCCAAATTATAGatGGAAGTTTAATGGAAGAGACATTGACATTGGGATGGATTATAACTATAATTTGATTGAAGGAAACCTATTGATTAATAACCCCGATGCAAGCCGACATGGTGGAGTCTACCAGTGTATAGCAACAAATTCTTTTGGGACTATAATCAGCAGAGAAGCAAAGATCTTGAAAactttaacaacaaacaaagaagCGCAGTGTCAGTGCGAGAAGGACAGGCTGTTGTCCTACTCTGTGGACCACCACCGCACTCAG

Function

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22678 lncRNA downstream 510963 45118290 ~ 45151671 (-) False AMCG00017105
TU22596 lncRNA downstream 833608 44799454 ~ 44829026 (-) True G18219
TU22583 lncRNA downstream 1006640 44653455 ~ 44655994 (-) False AMCG00017091
TU22511 lncRNA downstream 1274639 44387443 ~ 44387995 (-) True G18164
TU22503 lncRNA downstream 1285413 44376997 ~ 44377221 (-) True G18156
TU22760 lncRNA upstream 187401 45853062 ~ 45916620 (-) True G18352
TU22790 lncRNA upstream 436299 46101960 ~ 46102188 (-) True G18364
TU22792 lncRNA upstream 436601 46102262 ~ 46106593 (-) True G18366
TU22837 lncRNA upstream 774408 46440069 ~ 46454396 (-) True G18405
TU22851 lncRNA upstream 897433 46563094 ~ 46563573 (-) True G18419
AMCG00017109 mRNA downstream 15416 45623126 ~ 45647218 (-) True AMCG00017109
AMCG00017108 mRNA downstream 357318 45293659 ~ 45305316 (-) True AMCG00017108
AMCG00017107 mRNA downstream 404770 45245061 ~ 45257864 (-) True AMCG00017107
AMCG00017105 mRNA downstream 501497 45119685 ~ 45161137 (-) True AMCG00017105
AMCG00017106 mRNA downstream 594511 45059974 ~ 45068123 (-) True AMCG00017106
AMCG00017111 mRNA upstream 201366 45867027 ~ 45899846 (-) True AMCG00017111
AMCG00017116 mRNA upstream 706805 46372466 ~ 46382868 (-) True AMCG00017116
AMCG00017115 mRNA upstream 720757 46386418 ~ 46403301 (-) True AMCG00017115
AMCG00017122 mRNA upstream 818276 46483937 ~ 46607444 (-) True AMCG00017122
AMCG00017126 mRNA upstream 1240832 46906493 ~ 46916078 (-) True AMCG00017126
TU22128 other downstream 2798018 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 4445403 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 7603695 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 7603695 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 7904163 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 2823466 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 5765194 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 5779926 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 5779926 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 6190585 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile