RNA id: AMCG00017114


Basic Information

Item Value
RNA id AMCG00017114
length 2352
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00017114
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46312894 ~ 46327713 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGCACGTTATTCTCAAGCTGTTCGGTATGATTTCAGCCTCATCAGactcttaaaaatacaaacacttgGTTTTGAACAGGTCAATGGGAAAGATTTGTCCAAAGCAACCCATGAGCAAGCAGTGGAGGCTTTCAGGACAGCCAAGGAGCCAATTGTGGTGCAGGTCCTCCGAAGAGCTCCACGCATCAAAGTCCTGAACCCTACCCATGAGTCCCAGCTGGCTGACACTAGCACGCAGACAGACATCACCTTTGAGCACATCATGGCACTGGCAAAACTGCCTCCCACCCCACCTGTTGCGGTTCTTGAGCAGTACCTTTTGCCAGAAGAACATTCCCCAGGCCATGAATACTATGACCCAAATGACTTCTTGGAAGGTATGCATCCGGAAATGGAAAGAGAAGAGCTGGAATATGAGGAAGTAGATCTGTACAGACTGAACAGCCAGGACAAACTCGGACTGACGCTGTGCTACAGAACCGACGACGAGGATGACACTGGGATCTACGTGAGCGAGATTGACCCTAACAGCATCGCTGCTAAAGATGGCCGAATAAGAGAAGGAGATCGTATTATCCAGATAAATGGCATAGAGGTGCAAAACAGGGAGGAAGCTGTTGCTCTGCTTACCAGTGAAGACAGTAAAAATGTGTGTCTCCTTGTGGCCAGACCTGAGATTCAGCTGGAtgaaggatggatggatgatgaCAGAAATGACTTTCTCGATGATTTACACATGGATATGCTGGAACAGCAGCACCACCAGGCTATGCAATTCACTGCCAGCATGCTCCAGCAGAAAAAGCACGATGAAGATGGGGGGACTACAGACACAGCCACAATTTTGTCTAACCAACATGAGAAAGACAGTGGTGTGGGGCGTACAGATGAGAGCACAAGGAACGACGAGAGCTCAGAGCAGGAGAACATGGGAGATGACCAGACCACTTTGTCCAACACCTTAGGTAGTCACAAGAAGCTCGCCTACAGCCACGACACTCTCGGCAGCGGGGATATGCAGTTCAGCAATGAGTCCTTCATATCTGCAGATTATACGGACGCGGACTTTCTGGGCATCCCTGCCGATGAGTGCGAAAGATTCCGGGAGCTTCTGGAGCTGAAATGCCAAGTGAAGAGTGCCAACCAGTACAGCCTGTACTACCACACAAGCACAACGGATGTGAATAAAAGTGACCAGGAGAGCGTCGATAAGGAGCTGGAGATGCTGAATGAGGAGCTGAGAAACATAGAACTGGAGTGCCTGAACATCGTGAGAGCTCACAAGATGCAGCAGCTGAAGGAGCAGTACAGAGAGTCATGGATGCTGCACAACAGCGGCTTCCGCAATTACAACACCAGCATCGATGTTCGCAGGCACGAGCTGTCTGACATCACAGAGCTGCCAGAGAAGTCGGATAAGGATAGCTCCAGTGCCTACAACACGGGGGAGAGTTGCCGGAGCACCCCTCTCACGCTGGAGATGTCCCCGGACAACTCTCTGCGAAGAACTGCAGAAAACATCCAAGGCGGCGAAGGGGTGGCCGCCGGCGCATCGGGGCCACACGGTTTGCCTCAGAAGCCTTTGTCGTTGCAAGTCGGATGTCAGGAGTCCAGCTCCATTAAAGGGCGCTCGTCCTCCAAGGATTCAGACTCCAGCAAGCAATCAGAAGGGAAGGAGAGGAAAGCTGGGGAGGCCAGCAAACTGTCCAAAAGCCCCAGCTCTTGCTTATCCTACCCACACTCTCCATACAAGCATGCTCACATCCCGGCCCACGCCCAGCACTACCAGAGCTACATGCAGCTGATTCAGCAGAAGTCGGCAGTGGAGTACGCCCAGAGCCAGATGAGCCTGGTGAGCATGTGTCGAGACCCCAATTCGCCCAGCCAGCTGGAGCCCAAGATGGAGTGGAAGGTGAAAATCAGGAGCGACGGGACGCGGTACATCACCAAGAGGCCCGTCCGGGACAAGCTTCTCAAGGAACGTGCCATGAGGATCAAAGAGGAGCGCAGTGGCATGACCACAGACGACGACGCCATCAGCGAGATGAAGATGGGCCGCTACTGGAGCAAAGAGGAGCGCAAGCAGCACGTGGTGAGAGCGAAGGAGCAGCGGCAGAGACGGGAGTTCATGAAGCAGAGCAGACTGGATTGCATGAAGGAGCAGGGAAGTggagaggagaaaaaggaaTTGAACATCATTGAACTGAGCCACAAAAAGATGATGAAAAAGAGGGGCAAGAAAATCTTTGACAATTGGATGACAATCCAAGAACTGTTAACTCATGGCACAAGGTCACCCGATGGAACGAGAGTGTACAATTCCCTTTTATCTGTAACTACTGTGTGA

Function

GO: NA

KEGG:

id description
K15682 PDZRN3_4, LNX3_4; ligand of Numb protein X 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22791 lncRNA upstream 206376 46105597 ~ 46106518 (+) True G18365
TU22789 lncRNA upstream 211271 46101066 ~ 46101623 (+) True G18363
TU22781 lncRNA upstream 291549 46019341 ~ 46021345 (+) True G18357
TU22733 lncRNA upstream 530427 45782197 ~ 45782467 (+) True G18330
TU22717 lncRNA upstream 785889 45526744 ~ 45527005 (+) True G18316
TU22815 lncRNA downstream 44254 46371967 ~ 46372406 (+) True G18386
TU22852 lncRNA downstream 236257 46563970 ~ 46564202 (+) True G18420
TU22862 lncRNA downstream 277817 46605530 ~ 46608382 (+) True G18430
TU22897 lncRNA downstream 590633 46918346 ~ 46920546 (+) True G18462
TU22899 lncRNA downstream 602868 46930581 ~ 46930895 (+) True G18464
AMCG00017112 mRNA upstream 67628 46229049 ~ 46245266 (+) True AMCG00017112
AMCG00017113 mRNA upstream 215968 45943050 ~ 46096926 (+) True AMCG00017113
AMCG00017104 mRNA upstream 1085218 45220114 ~ 45227676 (+) True AMCG00017104
AMCG00017099 mRNA upstream 1351293 44949136 ~ 44961601 (+) False AMCG00017099
AMCG00017103 mRNA upstream 1378645 44933056 ~ 44934249 (+) True AMCG00017103
AMCG00017121 mRNA downstream 85689 46413402 ~ 46415356 (+) True AMCG00017121
AMCG00017120 mRNA downstream 88684 46416397 ~ 46419842 (+) True AMCG00017120
AMCG00017117 mRNA downstream 178614 46506327 ~ 46508536 (+) True AMCG00017117
AMCG00017119 mRNA downstream 272047 46599760 ~ 46600717 (+) True AMCG00017119
AMCG00017118 mRNA downstream 283003 46610716 ~ 46621777 (+) True AMCG00017118
TU22550 other upstream 1656796 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 2181292 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 3915107 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 7809262 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 12212031 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 3075006 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 3385811 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 4224167 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 4231737 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 6486540 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064359 False 4320 mRNA 0.47 10 NC_007117.7 44244383 ~ 44402151 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_11695434_11705476.mRNA True 3532 mRNA 0.48 10 CI01000340 11694675 ~ 11705798 (-)