RNA id: AMCG00017124



Basic Information


Item Value
RNA id AMCG00017124
length 588
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00017124
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46853928 ~ 46892467 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGATCTACAGCGAAATGGCAGCCCACAATGCAAGAGCAGAGGACATGCAGGCAAAAGGTACGGTTGTGAAAGCTGAGGAGAAAAGCTTGTTAAGCAATGGTAATATACCTCAGTCCAAGAATGATGAAGCGCTGAGTGAAGAACCAGTGAAAGACATGAGAAGACTGAGCACCATTCCAGAGTCTGAAGCTGATGAATCCATTACAGCTGTGCCTTCCAAAGAACCTCTGGAAGAAAGGGAATGGGCTGGATCCAGTTACTCGCTGTGTTCAGTGAACAAATATGGCAGTAGTTTTCCTTCTAGAGAAGTCAATTCACCACACCATCAGCCCGACAGAGGAGATGATTGTGCTACCCTTGTTTTGACCTGCCTCTTCTGCAAGTTTTACGACTTTTTTCTCATGTTACCCGGCACATGTGAAACACTTGTGAGTCGATGTTGCCATTCTTACAGATACCAGTCTGCGTCAAACGATGACACCATCAATAATGACTGCTTCTGCAACTGTGAATTTGACTGCAGCATATTCGATTCCTGTCATGAAACCAGTGAGTGCCTGGAACTAGCCATGGAAATCTCAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU22862 lncRNA upstream 245546 46605530 ~ 46608382 (+) True G18430
TU22852 lncRNA upstream 289726 46563970 ~ 46564202 (+) True G18420
TU22815 lncRNA upstream 481522 46371967 ~ 46372406 (+) True G18386
TU22791 lncRNA upstream 747410 46105597 ~ 46106518 (+) True G18365
TU22789 lncRNA upstream 752305 46101066 ~ 46101623 (+) True G18363
TU22897 lncRNA downstream 25879 46918346 ~ 46920546 (+) True G18462
TU22899 lncRNA downstream 38114 46930581 ~ 46930895 (+) True G18464
TU22914 lncRNA downstream 136320 47028787 ~ 47038523 (+) True G18470
TU23000 lncRNA downstream 586511 47478978 ~ 47479256 (+) True G18538
TU23063 lncRNA downstream 961925 47854392 ~ 47854658 (+) True G18582
AMCG00017123 mRNA upstream 45262 46772475 ~ 46808666 (+) True AMCG00017123
AMCG00017118 mRNA upstream 232151 46610716 ~ 46621777 (+) True AMCG00017118
AMCG00017119 mRNA upstream 253211 46599760 ~ 46600717 (+) True AMCG00017119
AMCG00017117 mRNA upstream 345392 46506327 ~ 46508536 (+) True AMCG00017117
AMCG00017120 mRNA upstream 434086 46416397 ~ 46419842 (+) True AMCG00017120
AMCG00017131 mRNA downstream 114668 47007135 ~ 47036741 (+) True AMCG00017131
AMCG00017127 mRNA downstream 148410 47040877 ~ 47044679 (+) True AMCG00017127
AMCG00017130 mRNA downstream 159931 47052398 ~ 47060586 (+) True AMCG00017130
AMCG00017128 mRNA downstream 169360 47061827 ~ 47072175 (+) True AMCG00017128
AMCG00017129 mRNA downstream 180252 47072719 ~ 47083518 (+) True AMCG00017129
TU22550 other upstream 2197830 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 2722326 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 4456141 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 8350296 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 12753065 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 2510252 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 2821057 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 3659413 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 3666983 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 5921786 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile