RNA id: AMCG00017126


Basic Information

Item Value
RNA id AMCG00017126
length 1329
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00017126
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 46906493 ~ 46916078 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTAAGCTTCCCAAAGAGTGCATTACTGGTCACGTTGAAGGTCAGGTGCTGAAATCATTTGTTCGCATGGCCAGAGCTAGGAAGATCTTAGAAATAGGCATTTTTACAGGGTATGGAGCACTGTCAATGGCAGAAGGTTTACCAGAGGATGGTAAATTAGTTGCCTGTGAAATAGAACCATACCTAAAAGAATTTGCCCAGCCTATATTTGATAAGTCCCcacatggaaagaaaataactgaagatTGGGAATTAGCTGCCACTGGAGAACAGTTTGACATGGTGTTCATCGATGCTGACAAATGCAACTACATCAGCTATTACAAGTTTCTCTTGGACAACAATCTTCTCCAAATGGATGGCATGATTTGTGTGGATAACTCTTTATTTAAAGGAAGGGTTTATCTACAGAATGCAACTGACGAGAATGGGCTTGCCCTTCGAGAATTTAACCAGTTTGTACAAAATGATCCTCGTGTAGAACAGGTTATCATTCCTGTTCGTGATGGTATGAGCATCATTCAAAGAGTGACATTAGGATCACCAGAAAAAATTGCATGGAAAAAAATTCTGGATCGCTTGAGGCTGGATGGGAAGGTGGCTTATGTGACCGGAGGAGGCCAGGGCATTGGCAGAGCATTCGCACATGCTCTTGGAGAAGCAGGGGCAAAGGTTGCCATAGTTGATGTTGTTAAGGAAAAGGCAGAAAGTGTAGCAAAGGAACTTACTCTGAAAGGTATACAGTCAATATCCATTACTTCTGACATAAGCAAGCCAGTGAACGTTGAGAGGATGATTGAATATATTATCACAAAATGGGGAACAATTCATATAGCATGTAATAATGCTGGAATAAATATGAATTCAGACAGTGAAGATACTTCCTTAGAAGAATGGGACCAGACCTTCAATGTGAACCTGCGAGGCACATTCCTGTGTTGtcaaGCTGCAGGTCGTATTATGCTGAAGCAAGGAtatgggaaaataattaatacagcaTCCATGGCTAGCTTAATAGTCCCTCATCCTCAGAATCAGTTGGCATATAACACATCAAAAGCTGGCGTAGTAAAACTGACACAGACGCTCGGCACTGAGTGGATCGACAGAGGAGTCCGAGTCAACTGTCTCTCTCCagGTATTGTTGACACTCCTCTCATCCACTCTGAAAGTCTGAAGCCACTTGTACAGCGATGGCTGACAGATATCCCTGCTGGACGGCTGGCTCGAGTGACAGACTTGCAAGCTGCAGTGGTTTACTTGGCATCTGAAGCCTCAGATTACATGACAGGGCATAACTTAGTCATAGAAGGTGGTCAAAGTTTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0008171 O-methyltransferase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22853 lncRNA downstream 342291 46563931 ~ 46564202 (-) True G18421
TU22851 lncRNA downstream 342920 46563094 ~ 46563573 (-) True G18419
TU22837 lncRNA downstream 452097 46440069 ~ 46454396 (-) True G18405
TU22792 lncRNA downstream 799900 46102262 ~ 46106593 (-) True G18366
TU22790 lncRNA downstream 804305 46101960 ~ 46102188 (-) True G18364
TU22974 lncRNA upstream 258568 47174646 ~ 47308372 (-) True G18519
TU22976 lncRNA upstream 261970 47178048 ~ 47196175 (-) False G18519
TU22990 lncRNA upstream 471820 47387898 ~ 47388821 (-) True G18529
TU22995 lncRNA upstream 510169 47426247 ~ 47428085 (-) True G18533
TU23024 lncRNA upstream 711185 47627263 ~ 47627521 (-) True G18559
AMCG00017122 mRNA downstream 299049 46483937 ~ 46607444 (-) True AMCG00017122
AMCG00017115 mRNA downstream 503192 46386418 ~ 46403301 (-) True AMCG00017115
AMCG00017116 mRNA downstream 523625 46372466 ~ 46382868 (-) True AMCG00017116
AMCG00017111 mRNA downstream 1006647 45867027 ~ 45899846 (-) True AMCG00017111
AMCG00017110 mRNA downstream 1240832 45662634 ~ 45665661 (-) True AMCG00017110
AMCG00017125 mRNA upstream 2282 46918360 ~ 46930810 (-) True AMCG00017125
AMCG00017132 mRNA upstream 131195 47047273 ~ 47051406 (-) True AMCG00017132
AMCG00017137 mRNA upstream 606704 47522782 ~ 47541031 (-) True AMCG00017137
AMCG00017136 mRNA upstream 626015 47542093 ~ 47550598 (-) True AMCG00017136
AMCG00017139 mRNA upstream 753683 47669761 ~ 47722260 (-) True AMCG00017139
TU22128 other downstream 4041877 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 5689262 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 8847554 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 8847554 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 9148022 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 1573049 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 4514777 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 4529509 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 4529509 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 4940168 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063041 True 2334 mRNA 0.47 11 NC_007117.7 43450221 ~ 43474757 (+)
grasscarp (Ctenopharyngodon idella) CI01000340_11194496_11206585.mRNA True 2200 mRNA 0.46 14 CI01000340 11194496 ~ 11206794 (+)