RNA id: AMCG00017127


Basic Information

Item Value
RNA id AMCG00017127
length 2739
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00017127
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47040877 ~ 47044679 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGCACACTGCGACTGCTACAGACTGTAGCTGAACCTTGACAGACCCTATTAACAAATCTGCCGTGCTTTAACTTTCTGAAGACCCAGCTATTTACATTCTTTGAAGAAAGGGCACTTTCTTAAAACTGAAGTCAAAATGTCAGATCACAGTGCAAACTCTGACCAGGACATCTATCCGGAGGAAATCGATGAAGACGAGATTCTAGCCAACCTTTCTCCGGAGGAGCTAAAGCAActtcaaaatgaaatggatgTTATTGCTCCGGATGAGAAAGTGCCAGTTGGAATGAGGCAAAAAGATCAGACAGAGAAGCCACCAACGGGATCGTTTGATCACAGGTCGCTGGttgattatttgtattggcAGAAAGAATCCACCCGAATGCTGGAGGAAGAAAGAGTTCCAACCACACTTTTACCAAGCAAGAGAAATACTACAGACGATTCTGACAATGAAGAGTTAGCAGACAAAGAAGAAATTGATTATATTGATCCAGATGAGAAAGTACCAGTTGGAATGAGGCAAAAAGATCAGACAGAGAAGCAACCAACAGGAACATTTGATCGCATGTCACTGGTTGATTATTTCCAGAGAAATGCCAGAGAAGTCTCTGACAATGAAAAGTCAGCAGCCGAAAAAGAAATGGATGAAACCATTACAAAAGCAACGTCTGAAGTAAAGGctgaggtggaggaggaggaagaagaaagaaagaaggaggaggaagaagaaaaagagaccattaataaagttaaagatgatgaaaacaaacattcaacaaAGACTGAGGAAAGCCCTGTCCGCGTTACAGATGAAACCAATGAGGATACAAGAAACACAGAATCACCTACTTCACCCAGAGAGCTGCTCAAACcacagaaagaaattaaatgttttgagaagAATGAAAGTGGATCAGAGATGTGTAACGGAGTACAATCTGACAAAGTCCAAAATGATTCAGAGAGTGTAACTGCGGAGACAATAACAGAGGAAACAAATATGACGGAGAAATTCCCTgtaaaggaagaaaagaaaatatccaAATTGAAAATCCCAAACAACCTGGCTCTAGGTGGCAATTTCATCAAGTTAACTGCAAGGCCCTCAGGAAACGAAACCAATTTGGAAAATACCCTGGAAAAGATTCGAAACAACCGTGCAGATGTCAAAGAAGTTAATCTGAACAACATCGAGAACATTCCTAAAGAGATGCTAATGGATTATGTGAATGCCCTTAAGAAGAACAAGCACGTTGCGACTTTCAGCATAGCCAATGTAGGGGCCGACGAGAACGTGGCATTTGCGTTGGCAAACATGTTACGTGAGAACAGGAGTATCACCACCCTCAACATAGAGTCCAACTTCATCACAGGCAAAGGAATTGTAGCCATCCTGAGGTGTCTGCAGTTCAATGAAAGCCTCACTGAGCTGAGGTTCCACAACCAGAGACACATGCTGGGTCACCATGCCGAGATGGAGGTGGCAAGGCTACTGAAGGCAAACAACACTTTGCTGAAGATAGGATATCATTTTGAGTTGCCAGGCCCGAGGATGGTAGTGACTAACTTGCTCACCCGAAACCTGGACCTTCAGCGTCAAAAAAGAATGGAAGAACAAAGGCAGCAACAGATGAAAGAGCAGGAGGAAATGATGGCCATGTATCAGAACAGTTTGGAGATACCCCCTGGCCTGTGGGAGATGTTGGGAGGCTTCCTGCCAGCAATGCCATTAATGCCACAGTACCCACCTCCAGCACCAAGTCCTCCACTGCTGAAGAAAACACCTCGCAATCCACCTGAACCAGTGCTGAACAATGCCAGACACAACCCACTGCAAGACATTAAACTGAAGAAGACACCAAGACATAGGGATGCAAACAGAGATCTTACTCCGAATGAGAAAGCCAATCTTAAGGATGTGATAAAGACACTGAAGCCTGTTCCTAGACGGAGGCAGCCCCCGAAGGTTGATGTGACCCCTCGAGATCAGTTGCTTAATGATATCCGGCAAAGCAATGTGGCTTATCTCAAATCGGTAAGCAGTATCCGTGATTCACAAATGATCATGCTAAATGAATGGCAGGTCATTAGGTTCCTCTGCCGAAAGTCCTGGAGTCAGAAGAAACTAGACTTTTTTGAAGACACTGCATAATAGCTGTTTGAGTGTGGGAACAAGATTCCTGTATCTACACTGAAGGCCTTTGAAATGACTCTGAAATGTATAGCCAGCAAactatgtatgttttcatttagattGCACAACCCTTACCTGTAAGGCATCTGTCAAGGAAAACTACTGCAACAAATCAACAATCATACCTTTTCAGCATCTTTAGCTAGACTTGAGCATAGCCATTCAACTTTTGCAATCTTTCGCTGAAGCACCATCAGAACAATGAGGTTTAAATCTAATTCAGATATAATCCTTTGAGTTACGCTGAACAAGTGTCTCAAGATAAAAAGGTATGAGTGATGGTATGcttatgtttattaatatataaaatatatttcttcttacatgtatttgttttttatataaatatatataaaatgttgattttatataaagtgtggAACATCTAAATGGACAGTGGAATGACACTGTTCAGACATGAAATGTTAatcttgtaaaaaataaaaaattaaaaaaatctgtcaaaGTACATAAAGatcaaaatgttcaaaatgagtTTACGTTTTAGAGAAtctaaataaagtatattttagaAGCAT

Function

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22914 lncRNA upstream 2354 47028787 ~ 47038523 (+) True G18470
TU22899 lncRNA upstream 109982 46930581 ~ 46930895 (+) True G18464
TU22897 lncRNA upstream 120331 46918346 ~ 46920546 (+) True G18462
TU22862 lncRNA upstream 432495 46605530 ~ 46608382 (+) True G18430
TU22852 lncRNA upstream 476675 46563970 ~ 46564202 (+) True G18420
TU23000 lncRNA downstream 434299 47478978 ~ 47479256 (+) True G18538
TU23063 lncRNA downstream 809713 47854392 ~ 47854658 (+) True G18582
TU23088 lncRNA downstream 1017720 48062399 ~ 48065018 (+) True G18607
TU23215 lncRNA downstream 1277584 48322263 ~ 48326805 (+) True G18722
TU23309 lncRNA downstream 2162129 49206808 ~ 49211256 (+) True G18791
AMCG00017131 mRNA upstream 4136 47007135 ~ 47036741 (+) True AMCG00017131
AMCG00017124 mRNA upstream 148410 46853928 ~ 46892467 (+) True AMCG00017124
AMCG00017123 mRNA upstream 232211 46772475 ~ 46808666 (+) True AMCG00017123
AMCG00017118 mRNA upstream 419100 46610716 ~ 46621777 (+) True AMCG00017118
AMCG00017119 mRNA upstream 440160 46599760 ~ 46600717 (+) True AMCG00017119
AMCG00017130 mRNA downstream 7719 47052398 ~ 47060586 (+) True AMCG00017130
AMCG00017128 mRNA downstream 17148 47061827 ~ 47072175 (+) True AMCG00017128
AMCG00017129 mRNA downstream 28040 47072719 ~ 47083518 (+) True AMCG00017129
AMCG00017133 mRNA downstream 45690 47090369 ~ 47164242 (+) True AMCG00017133
AMCG00017134 mRNA downstream 342505 47387184 ~ 47428623 (+) True AMCG00017134
TU22550 other upstream 2384779 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 2909275 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 4643090 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 8537245 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 12940014 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 2358040 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 2668845 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 3507201 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 3514771 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 5769574 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile