RNA id: AMCG00017128


Basic Information

Item Value
RNA id AMCG00017128
length 5080
RNA type mRNA
GC content 0.44
exon number 17
gene id AMCG00017128
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47061827 ~ 47072175 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGGGGCTTGCTTGCTGCGACGTGGAAAGGAAGTTGATGCTGAAATATCAAAACAAGACGCTCTTGCATCAACGACGACAGGTCCTTAAAAAATGACAGACTTTCCAGCCATGTCGTGAAACTGCGGCATGATTGTACACAAACGTGGCCCTGTTTTGTAGGATAATGTAGAATAGTGGAGCTTGTCTGTGTTTGATTAACAGCGGGAGTCAGTGGAAGGGCCTAGCTGTGGAAGAAGGCAGGATAGCAACTCAGGTTACACTGGGCTTTAAATCGGTCTCGTCGGGAAGAGGATTTCCCTGTCTTTAAATGTAGAACAAGATGAGTTGGTTTAATGCCTCTCACCTGTCCAGTTTTGCTAAACAGGCTCTGACCACAGCTCAGAAATCAATTGACAGGGTTTTGGACATCAAAGAGGAAGATCAATGGGGTGAAACTGTGTTGCCGTCCTATGATGttttaccTGGAAAGACGTCTTCCTCAGGTGGGGGCTGGGGCACGATACAGTGGGACTCCCCTCCAGAGGAATGTTCTCAGACTACTCCGGTGTCTACAGAAGCTATCACCACTCCGGTCACACGGACGGTAGTGGATGAATCTGAAAACTTCTTCAGTGCCTTTTTGCAACCAGGAGATCTACAGAATGTAAAGAAAACTCAGGTGGTGTCGGTCCCCCCTACCAAATCACATAGGCTCAAGGAAGAGAAGACGGGGGATGCTGATGAGAAGACGGAGTCAGGTCCTCAACAACCAGGTCCTGTTGAACCTGGGAGGTTGGAGGGAAATGAGCCAGCAGTGAGCAAACCTGTAGACACTGAACCATTTAAGCCTGCTGTCACTGTAGATACTGGTGTCCAAAAGCCAGATCCCGAGAGCTTTGTTCTACAAAATTCCCTTAGAGAGGCGGAGTGTGTAACTGATAGAAATAGCAGTGAGGAGACATCTGATAGTACAGATGCTGTTTCAGAGGAGACAAAATCAGACGAGCCCACTTTGCCCCCGGACACCCCAGTTGAGGAGAAAGTGGTTAATGTCGGTACAGGTGAGACACTGCCTGATAGTCCTTCAAAACCTCAACCTCCTCCCTCAAAAGACATGTTGTTGGAGTCAAAAGATCCTAAATCAGAAGACAGGCAAAGCGACACACCTTCCCCACCCGTCAGTACTTTCTCTTCAGGAACCTCAACCACCAGTGACATTGAAGTGCTGGACCATGAGAGCGTCCTTAGTGAAAGCTCGGCCAGTTCCAGGCAAGAGAACGCAGACTCCAAAGCAAGCTTGCACCTGATGCAGACCTCCTTCCAGCTTTTGTCAGCCTCTGCCTGCACCGACTTCCAAAGGCTAGATGACTACCAGAAGCTCACGGAAAGCTGCAGTTCTTCGGATGCATTTGAGAGAATAGACTCCTTCAGCATGCAGTCCCTGGACAGCCGCAGTGTCAGCGAAATCAACTCGGATGATGAATTATCAGGTCGAGCCTGCACTCTGGCCTCTGTCACTACCAGCCCAACAACTCCAATTCCAGCAACTGCCGACGAGCTCAAAAGTGAAGTGGAATTTACTGAAACTATGAGGGACAGATCATTAgaggaaaatgaaatggaagaGAGTGGCCGAAGTGCAACTCCAGTGAATTGTGAACAGCCTGAAGAACTCATGCCAGCTGAAAGCCCTAGTAACAGTTCTTGCTCACTGAGTAACGTCAAGGAACTGCTTCCAGTACAAATAGTTCCTGAAGAAAATCATGTAATTTCAAGTCCTCAGATGCAAGAGCTACAAAAGgttATTGATGAACTGACAAGTAAACTTGAAAAGAGGGAGACACAGTTGTTAGCTGTAAGTAAGGATAAAGCAAGACTGGAAGAGGAATATGACAATCTTAAAGATGAAATGATCAATCTGAAGGAAGAAAGTTCCTGTGTTCAGTCTCTGAAAGAAGAGTTTACCCAGCGAATTGCAGAGGCACAAAAGAAAGCACAGGCAGCCTGCAAAGAACGAGATTCTGCGAAAAAGGATCTGAAAACACTAAAAGAAGAGCTTGCAACAAGGCTGAACTCAAATGAAACTGCTGAAATAATGAAGGAAAAAGATGAGCAAATCAGAGGCCTGCTTGAAGAAGGTGAGAAGCTTTCCAAGCAGCAACTTCACAATTCCAACATGATAAAGAAGCTGAGAGTTAAAGAAAAggagaatgaaaatgtgatCACTAAACAGAACAAGAAGCTGAAAGAGCTAGAGGAGGAGTTAAAGCATCTTCAACAGGTGTTGGATGGCAAAGAAGAGGTCGAGCGGCAGCATCGCGAAAACATCAGGAAGCTGAACGGTGTGGTCGAGAGGCAGGACAGGGAGCTGGGCAGACTGCAGACAGAACTGGAAGAGTTTCAGGAGAAGAACCGCAGCCTTCAAGCAGCGTTTGATAACTCCTACAAGGAACTTGCAGAGCTGCATAGAGCAAATGCTACAAAGGACAGCGAGGCCCAAGAAGCCGCACTAAGCCGGGAGATACAGGCCAAAGAGCAGCTCTCTGTAGCTCTGGAGATGGCTCAGGAGGAGTCCAGAACACAGCAGGAGGCTTTAGCAATCCAGATTACAGACCTGCGGTTGGCTTTACAGCGAGCTGAGCAGCAACAGGCTAGGAAGGAGGACTATCTTCGAGAAGAGATCAGCGAATTGCAGCAGAGACTTCAAGAAGCGGAAACTCGCAACCAAGAACTGAGCCAGAGTGTGACATCGGCAACAAGGCCACTGCTGCGGCAGATTGAAAACCTACAAGCTTCACTTGGGGCGCAGACCGCTTCCTGGGAAAAACTGGAGAAGAACATCTCAGATAGACTTGCGGATGCTCAGGCACAGCTGGCGGTGGCGGTGGAGAAAGAGAGATCTGCATCAGAGGGGCTTCTCACTATCAAATCCCAGCTGGCTTCCATGGAGTCCCAGGGCAGTTTGCTGCGTCAGGAGAAAGGCCGTCTGCAAGCCCTGCTGGACGCTGAGAAATTCAGGAGAGAGAAACTGGAGGCCGACAGCAGCAGGGAGCACGTAGAGCTGGAAAATTTGAAAGGCGAGTACACAAGAGCACTTGAGGATTACAGAAAGGAGAagATGCTACTGATAAATCAGTTggaaatggagaaaataaaggttgaacaagagaaaaataaatattttcttgtgCAAGAAGCACTTAAAGAAAAGGAAAGAAAAGCCTACAGTCACCCTACAGAGTCAACTGCTTCAGCCACGCCTTCCTTATCGCGGTCGAGCTCCATCAGCGGGGTGGACATGGCAGGCCTGCAGACCTCCTTTCTTTCACAGGACGATGCCCTCGATCACTCGTTTGGCACGATGAACATGTCGGCCAGTGGGAGCAACCTGTATGACGTGGTCCGTATGGGGGCAGGGTCGAGTGTCATCGAGAACCTGCAGTCTCAGTTGAAACTACGCGAAGGGGAGATCACACAGCTGCAGCTGGAAATATCAAACCTTGAAAAAACGCGGTCAGTAATGTCAGAAGAGCTGGTGAAATTGACCAACCAAAATGATGAACTGGAAGAGAAGGTGAAGGAAATCCCCAAACTCCGATCACAGCTCAGAGACCTGGATCAGAGGTACAACACCATTTTGCAGATGTACGGAGAGAAGGCAGAGGAAGCGGAAGAACTGCGGCTTGATCTAGAAGATGTGAAGATTATGTACAAAACACAGATCGATGAActtctgaaaacaaagaaatagaaatataGCCCCATTGTTGCATCTGAATTTGAAGTGTGAATTAAAACGTACAGGTTCCCTGTGCACGTACTGTATGAAGATGGAAAATGATCGTATTCGTAACTCTAAAAATAGGATCTGCGTGTTTTTGTAACCGCCCTCTCCACTAAAGCTGTTCCCTCCAAggattattgaaatgtaaaccaTTCCCCCTTCTATATCTGTATAACAGAAGAAAAGGTGAGTATGAAACtagttattaataaaattgtgaTCTGTGGAGTTTATTAAAGGATAGTAAGTTTATTCACTACGTTTTATGGCTGTTGAATTTATTTAAGAAACTTCACGTCAAATTCtggttaaatgtttatttttctcaaatggttttcctttttatttcacagCTGTCACTTTGTCAGTAATctgacactttaaaaatatttatggtGAACcgaaactatttaaaatgttttcttgggTTTTATTCCAGTTAGTACATGAGTGATCTTATTCGTTAAAAATCAGAATCTAAAAACTCTTGAAGTGCTACTCCTGCAGTTGTATAGCTTGCTTGCTGacatttcatatacatatatgtaaaattAGAAGAAATGCCTTATGTTGAAAGATTCGCATTACTGTGATAGattaatctaaaatgtaattgtaaaaataataatatatttcaagaaAGGGACCAGGCATATAATTGAAGGATATTTGAGTTTTACTTTggtctttacattttcatagtTACAACAACTGGTTTGATTATATCCCTTCTGTGCAAGTGAAAAACGTATCCGGTTGGTATCATTTGGGACTCCATTGTATTAATCAACCAGCTTGACCATAGTCCAACCCCCCCACAATGTTTCACGCTACTGATTGATCAACGCATTaaatctttcaaaaaacaaaatcttattTGATCTCTGTTATCAAAAGGATAACCTAGACCCTACGTTTAAATTGACCTAAATCTAAGATTTCCATAAAGTCTttgttaaatagttttatttattttgaatgtgtctCATCACTGTTTTTCTGGAGGTGTATGGGGTAAACTACACAAAAATACCTAACCTTAAATAACTACCCTTCTGCTGTATTTTTAGTACTTCTGattaattttgatttctttctttttctatgaTCTGGCACCATTGCCAAAGGGGAACATGCTATAGTACATTGCAATACAGCTTATacatttattactattattatttaaattgatgttaaaaaatatagagGTTGCAAATGTAACTTTTTGATATCCTTACCAGTTGTAAATTCctgtaaatatgaatgtaagAGAATTAATAGGgtacaaggaaaataaaacattttatgagcAAA

Function

GO: NA

KEGG:

id description
K20286 TMF1; TATA element modulatory factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22914 lncRNA upstream 23304 47028787 ~ 47038523 (+) True G18470
TU22899 lncRNA upstream 130932 46930581 ~ 46930895 (+) True G18464
TU22897 lncRNA upstream 141281 46918346 ~ 46920546 (+) True G18462
TU22862 lncRNA upstream 453445 46605530 ~ 46608382 (+) True G18430
TU22852 lncRNA upstream 497625 46563970 ~ 46564202 (+) True G18420
TU23000 lncRNA downstream 406803 47478978 ~ 47479256 (+) True G18538
TU23063 lncRNA downstream 782217 47854392 ~ 47854658 (+) True G18582
TU23088 lncRNA downstream 990224 48062399 ~ 48065018 (+) True G18607
TU23215 lncRNA downstream 1250088 48322263 ~ 48326805 (+) True G18722
TU23309 lncRNA downstream 2134633 49206808 ~ 49211256 (+) True G18791
AMCG00017130 mRNA upstream 1241 47052398 ~ 47060586 (+) True AMCG00017130
AMCG00017127 mRNA upstream 17148 47040877 ~ 47044679 (+) True AMCG00017127
AMCG00017131 mRNA upstream 25086 47007135 ~ 47036741 (+) True AMCG00017131
AMCG00017124 mRNA upstream 169360 46853928 ~ 46892467 (+) True AMCG00017124
AMCG00017123 mRNA upstream 253161 46772475 ~ 46808666 (+) True AMCG00017123
AMCG00017129 mRNA downstream 544 47072719 ~ 47083518 (+) True AMCG00017129
AMCG00017133 mRNA downstream 18194 47090369 ~ 47164242 (+) True AMCG00017133
AMCG00017134 mRNA downstream 315009 47387184 ~ 47428623 (+) True AMCG00017134
AMCG00017135 mRNA downstream 392996 47465171 ~ 47473829 (+) True AMCG00017135
AMCG00017138 mRNA downstream 556941 47629116 ~ 47685872 (+) True AMCG00017138
TU22550 other upstream 2405729 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 2930225 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 4664040 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 8558195 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 12960964 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 2330544 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 2641349 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 3479705 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 3487275 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 5742078 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile