RNA id: AMCG00017129


Basic Information

Item Value
RNA id AMCG00017129
length 3721
RNA type mRNA
GC content 0.36
exon number 15
gene id AMCG00017129
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47072719 ~ 47083518 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGACTCGGTCCGACTGTTACACGAAGTTCCTGCAAGCGCAGCTGCTGACTATGCTGCTGCTGGTGGCACTGGGCATGGTCTGTGGTTACACTGTGGTTCACACAGAAGAGGACGGTCGCTCCTTCACAGCAGCCAGCCTCCACAAACCCGTACTGAACTACAGCAGCCTTGCACTACCAGAAGAGCATGTTCCTTATTTTCTCAACAATAACAAGAAGATTGCCAAAGTCTGCAAAGAGGACCCATTGTGTCCATTTAAAGAAATCCTGAAGAACACAAAATCGTGCTGGGGTTATGAGAAGAACTGTTTACCACAATACAGGTTTAGCTACCCAGTGTGCTCCAGTGTGGATTCGGGATGATATAAAGAGGATTTTATCCAGGAGGGTGAGATAGGAGGGCACTGTAGCCTCAATAAGAAGGCATTGTTATCTGAGGGACAACACAAGAGCCCTTTACAGTCATGGTTTGCAGAATTGCAAACGTATACACAGCTGAAATCTCATCCAATAGATGATGGCATTTGTGATCTGATTATCGAAAAACCTACAATTTTCATGAAATTAGATGcaggGGTCAACATGTACCATCACTTCTGTGACTTTGTAAATCTCTATATATCTCAGCACATCAACAATTCTTTCACTAAAGATGTGAAAATCATCATGTGGGATACAAGTTCGTATGGATATGGGGATTTATTTAGTGACACATGGAAAGCCTTCACTGATTATGAAGTTATTCATCTTAAAACATTTGACTCTAAAAGGGTTTGCTTCAGAGATGCCGTTTTTGCATTACTCCCTCGGATGAgatatggtttattttacaatacaccATTAATTTCTGACTGCCATGGTACAGGGTTATTCAAGGCATTCTCACAGCACGTTCTGCACCGATTGCACATCATCCAGGAAGGGCCCAAGGATCGGAAAATTCGTGTCACCCTTTTATCAAGAAGCACAGAGTATCGTAGaattttaaatcagtttgagcTGATAAAAGCACTGAAGACTGTACCTCTATTTGAGATTACTCAAGTAGATTACAAATACAAGGAGATTCCTTTCTTAGAGCAgattaaaatcacacacaactCGGACATCTTCATTGGCATGCATGGAGCTGGACTAACTCACCTGCTGTTTCTCCCGGACTGGGCTGTCATTTTTGAACTATATAACTGTCAGGATGAAAGCTGCTATCGGGACTTGGCGAGATTGCGTGGAATACATTATGTGACTTGGCAGAAAAAGGACAAAGTTATTCCTCAGGACAAGGGCCACCATCCCACACTTGGGGAACATCCAAAATTCACTAATTACAACTTTGATGTTCAGGAGTTCATGCGTATGGTTCTCCAAGCTGCGGAGCACATGCAGAAGCATCCAAAGTGGCTCTCTGAGCAAAAGCATGATGAACTGTAGAGCACAGCACAGGAAGATGGCAAACACAAGTATTCAAATAATGGAGCATTACCGTGGATGTGGTGTCATTAACTTAATGCTGAAATAGATTGCCATTCTTAATccttatctatatatatatcttgaatGCATATGTAGATGTATACACAGGCACTTATGAATGTATAGATCAATTTCACTGCCTTACAGCTGCTATTATATTTAGTTGCTGGAAATGTCTGATGTGCTGCACTGTTAGTTAGCTATGAATTAGATGTATAAAAGTATGATTTATTGTGTGAGAATGTAAGAAAGAAGATTTGCTCCCCAAGACTTTAATATATTTGAGGTCAAGTTCAGGTCAGAATTTGCTGACTTTATTTAATATGGATTTATTACTTGccctaatttattttaatgaatgtaaaagACTGAATAGAACAtagcagtattttatttatttattgcaaactgtattttgtaactgCTGCTGGGTCTATTCTCACACAGGTCTACAAGGGTTATAGTTTGCCAAGCCAGGAAAGCTGCTTTAACTTGAAAACTTCACTTGAAACCCTTgagattaatattttaacaaacaagTATTGTTGTGGATACAGTAAAGCCAATGTAGGTATTCAATTCAGACAATTAATTCAGCCTGATAAGACAGTACTGGGGAAAAAGGTAAAAATTGCAATtgtcagtatatatatatatatagtaagtaAAAGGCTCTGTGAATGGCCCTGTAGTTTTTCCACACATGCTTGTGGgttacattgttttgtgtttataggAATTCAGAATatgcaattaatttcaaaaatgCTATTAAACCAGAGACAATGTGCAAAGgaaaatactattaaataaatacttagcactttttattttattttgtataagaACTGGCACTTTGGAATATATGGGAAtaccccaccaccacctcaGTTCTAGTAAAGGTCCAAACGTTGTACATGAACCCCATATTTAGTAGTTtaagatgtttttcatttttttcagaaactCTTTAGAATTTTTCTAAAAActataaatgatttattgaGACCCATTACATCCATATGTAAGCCACATTCATTTACATATAATAGGGGCATGTTACATTATAAATTCCTTAGACATACAGTAGTcatgatacaaaacaaaatgtcattgttgtttttagtgTGAGATACTATTGTGACAATGTTTGTGGAGCTGCAATCCTCTCTAGAACAATGACGATGGCATTGTTAAACATGTTGCATAGTACAGAATAATGCTTGTATTGCAAGGTCACATTGTTCTGCCTTGATGAGTTTTAAAgtgttgattaaaataattataatgtttctgTAGTTAAACAGTTCATTatgaagaagatgaaaaatggaaatgtatcatAATGGAAGACATCTCTGTGATGACACGTCTGTATTGTTGAAGTACCGGTGCAGCTATTAGAGAGAGTTTCGATTTTGTggtcacattttatttgtacctGTTCTTTTTTAACTGTAGCAGAATGTGAGGTCCTTCAGCTTTTGTGGAATATCAGCAATCAGGACTATTTATGTTGGaccattaaaacaataaatgaccctttaaaacaaacatggttAAAGGcttcatgtatgtattatgcatgtgcatacataatacatttctaaagtGTTATGTTGAAGCATGCAGCTATAGAGGTCATGGGTTTTGGAGGgttttggcaaatgtttttgaattgtTTGTAGTCATTGTGCTCCTTTAtttatgcaaatgcaaaaatcCTTTCAAAGAcgcatttataatgtatattgcCTCTAATTAGCAGCTGCTTCTTTATTCTGTGATGTTGTGTTGCACTGTTTAACATGAACTACACTGATACACATCATGTTGCTGTTATGTAAATAtcttaaatgtatgcaaaatattgtttaaaatgctaTATACTGAGTTTGTTTAAACTTTTATAAACCAaatgtgcattgttttaaaagtcTGCATTCTGTCTGACTCCACAGAAACATGACAACttgagtattttaaaaatgtattttctaaatcaaGGTCAGAGTTATTTCAGTAGATATTTTTCTAAATTTTCATTCTACTTCAAGCTGGGAGAAGTCATTGGCACTCCTTTTATACTTGAATTCGAGATGATTTTAAGTTTAACTAATATATACCGTtgtttctaaaaatacatattttgtttcattctttgaaacatgatttttttaaatacatgtaacttATGAGTCAcacaattgtatatattttaagtttttcaaaatgtatgttctAA

Function

GO: NA

KEGG:

id description
K18134 EOGT; EGF domain-specific O-GlcNAc transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22914 lncRNA upstream 34196 47028787 ~ 47038523 (+) True G18470
TU22899 lncRNA upstream 141824 46930581 ~ 46930895 (+) True G18464
TU22897 lncRNA upstream 152173 46918346 ~ 46920546 (+) True G18462
TU22862 lncRNA upstream 464337 46605530 ~ 46608382 (+) True G18430
TU22852 lncRNA upstream 508517 46563970 ~ 46564202 (+) True G18420
TU23000 lncRNA downstream 395460 47478978 ~ 47479256 (+) True G18538
TU23063 lncRNA downstream 770874 47854392 ~ 47854658 (+) True G18582
TU23088 lncRNA downstream 978881 48062399 ~ 48065018 (+) True G18607
TU23215 lncRNA downstream 1238745 48322263 ~ 48326805 (+) True G18722
TU23309 lncRNA downstream 2123290 49206808 ~ 49211256 (+) True G18791
AMCG00017128 mRNA upstream 544 47061827 ~ 47072175 (+) True AMCG00017128
AMCG00017130 mRNA upstream 12133 47052398 ~ 47060586 (+) True AMCG00017130
AMCG00017127 mRNA upstream 28040 47040877 ~ 47044679 (+) True AMCG00017127
AMCG00017131 mRNA upstream 35978 47007135 ~ 47036741 (+) True AMCG00017131
AMCG00017124 mRNA upstream 180252 46853928 ~ 46892467 (+) True AMCG00017124
AMCG00017133 mRNA downstream 6851 47090369 ~ 47164242 (+) True AMCG00017133
AMCG00017134 mRNA downstream 303666 47387184 ~ 47428623 (+) True AMCG00017134
AMCG00017135 mRNA downstream 381653 47465171 ~ 47473829 (+) True AMCG00017135
AMCG00017138 mRNA downstream 545598 47629116 ~ 47685872 (+) True AMCG00017138
AMCG00017140 mRNA downstream 820164 47903682 ~ 47950784 (+) True AMCG00017140
TU22550 other upstream 2416621 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 2941117 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 4674932 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 8569087 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 12971856 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 2319201 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 2630006 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 3468362 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 3475932 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 5730735 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile