RNA id: AMCG00017130


Basic Information

Item Value
RNA id AMCG00017130
length 1970
RNA type mRNA
GC content 0.41
exon number 17
gene id AMCG00017130
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47052398 ~ 47060586 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGAGGAGATGGGATCAGGAAAATATGGCGGATGTGGAGGAGCCAATGGCTGTGGATGGTGGGTGTGGGGACGGTGGAGACTGGGAAGGTCGCTGGAACCACGTCCGGAAGTTCCTTGAGCGATCAGGACCTTTCACACACCCAGATTTTGAGCCAAGCGCTGAAtcaCTCCAGTTTTTATTAGAAACATGCAAGATACTGGTCATTGGAGCTGGAGGGCTTGGATGTGAACTGCTAAAAAATCTGGCCTTGTCTGGCTTTCAACATATTCATGTAGTTGATATGGATACCATTGATGTCTCCAATTTAAATAGACAGTTTCTATTTAGGCCCAAAGATGTGGGACGGCCCAAAGCAGAAGTGGCCGCAGAATTTATCAACAGTCGCATCCCCGGCTGCAATGTTGTCCCGTACTTCAAAAAAATACAAGACTTTGATGATTCATTTTATAGACAATTTCACATAATCGTATGTGGACTGGATTCAATCATTGCAAGGAGGTGGATCAATGGCATGCTgATGTCACTCTTAAGCTACGAGGATGGTGTTTTGGATCCCAGTTCCATTATCCCTCTCATTGATGGGGGAACGGAGGGCTTCAAAGGCAACGCACGTGTTATATTGCCTGGAATGACAGCGTGCATTGATTGCACACTTGAACTTTATCCACCACAGatcAATTTTCCCATGTGCACGATAGCGTCCATGCCACGGCTACCAGAACACTGTATTGAGTATGTCCGGATACTGCAGTGGCCGAAGGAGAAACCTTTCGGAGAGGGAGTGACTCTGGATGGGGACGACCCAGAACATATCCAGTGGGTGTTTCAGAAGTCCCTGGAGCGGGCAGCTCAGTTTAATATTACTGGCGTCACATACAGACTCACACAAGGTGTTGTGAAAAGAATCATCCCTGCTGTTGCTTCAACAAATGCAGTAATTGCTGcgATCTGTGCTACTGAAGTTTTTAAAATCGCTTCAAGtGCATACATTCCTCTAAATAATTATCTGGTGTTCAATGATGTAGATGGTCTTTACACATACACGTTTGAAGCAGAAAGAAAGGAAAATTGCTCGGCCTGCAGTCAGGTGCCCCAGGAGCTGCAGTTCCCTCCATCAGCCAAACTCCAGGAAGTGCTGAATTACCTCACTGAAAACGCGTCTTTGCAAATGAAATCTCCAGCCATTACAGCAACTttggaagggaaaaacaaaacactttatttacagactGTAGCCTCTATTGAAGAAAGAACGAGACCAAATCTTTCCAAGACACTGAAAGaacTTGGTCTGGCTGATGGACAGGAATTGGCGGTGGCAGATATCACCACTCCTCAAACAGTGTTATTTAAACTCCATTTTACAACCTAGTCTGATGGGCACTTGTGAAtctgtgaattaaattaactgaataattttaaaactaaattaggAGAAAGACTTAACAGGCACCAAGTAGATGTCctttgtaattatttgctttttactgtagaaaaaaaaaatatttaagacagttaaatgcatttatgtacATAAAAGCTATCCTTACATTAAGATCTCAGCCCAACATTTACCAAGACATTTTTTAGATTAACATTTATGTAATTAGGCTAAGTGACCATCAGTTCCATATATTTAAAGGATTCTGAATGAGACAAAGAGGACAAAAAAATTAATGTAAGACTAGACCTAACCTAGTTGCAGCACCTATTGTATGcaatgttataaaataatttatccTGTAATGGGGACCTGAGCAAGGTTAAAGTTAGAGATAGCATACCTACCATCCTTCTGTTTTATGATaacttgtatatttatttgttatggtGTTACCTTAGCTTTCTGGTTGCAGTTTAGTTTATCATATGGTGATAAATATGTAcgtgcaaaaatgtaaattgtatgttttcGAACACATTTATGAAATGTGTACTGAAATAAAGTTTTGCTACACCATAAATA

Function

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016881 acid-amino acid ligase activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
K10686 UBA3, UBE1C; NEDD8-activating enzyme E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22914 lncRNA upstream 13875 47028787 ~ 47038523 (+) True G18470
TU22899 lncRNA upstream 121503 46930581 ~ 46930895 (+) True G18464
TU22897 lncRNA upstream 131852 46918346 ~ 46920546 (+) True G18462
TU22862 lncRNA upstream 444016 46605530 ~ 46608382 (+) True G18430
TU22852 lncRNA upstream 488196 46563970 ~ 46564202 (+) True G18420
TU23000 lncRNA downstream 418392 47478978 ~ 47479256 (+) True G18538
TU23063 lncRNA downstream 793806 47854392 ~ 47854658 (+) True G18582
TU23088 lncRNA downstream 1001813 48062399 ~ 48065018 (+) True G18607
TU23215 lncRNA downstream 1261677 48322263 ~ 48326805 (+) True G18722
TU23309 lncRNA downstream 2146222 49206808 ~ 49211256 (+) True G18791
AMCG00017127 mRNA upstream 7719 47040877 ~ 47044679 (+) True AMCG00017127
AMCG00017131 mRNA upstream 15657 47007135 ~ 47036741 (+) True AMCG00017131
AMCG00017124 mRNA upstream 159931 46853928 ~ 46892467 (+) True AMCG00017124
AMCG00017123 mRNA upstream 243732 46772475 ~ 46808666 (+) True AMCG00017123
AMCG00017118 mRNA upstream 430621 46610716 ~ 46621777 (+) True AMCG00017118
AMCG00017128 mRNA downstream 1241 47061827 ~ 47072175 (+) True AMCG00017128
AMCG00017129 mRNA downstream 12133 47072719 ~ 47083518 (+) True AMCG00017129
AMCG00017133 mRNA downstream 29783 47090369 ~ 47164242 (+) True AMCG00017133
AMCG00017134 mRNA downstream 326598 47387184 ~ 47428623 (+) True AMCG00017134
AMCG00017135 mRNA downstream 404585 47465171 ~ 47473829 (+) True AMCG00017135
TU22550 other upstream 2396300 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 2920796 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 4654611 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 8548766 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 12951535 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 2342133 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 2652938 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 3491294 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 3498864 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 5753667 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile