RNA id: AMCG00017131


Basic Information

Item Value
RNA id AMCG00017131
length 3120
RNA type mRNA
GC content 0.49
exon number 23
gene id AMCG00017131
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47007135 ~ 47036741 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTCGGGTTTTATGTGTGGAGTCGAAGATTTTTTGATCAGTGGGAGCCAGTTTGTATGGGACCTAACGATCACAACTCTGAGGAAATGgtacacagagagagtgagacgcTGCCAGCAGCTGGTGAGGACGTGGTGCGGGCTGGGGGAGGTTTATCAGATGACAGAAGGCAGGCTCTGCCAGGTGCATCTCCTGGATGAGAGGAAACTGGAATTGCTTGTTCAGCCCAAGCTTTTGTCACGGGAACTACTGGACTTAGTTTCATCCCATTTTAACCTCAAAGAAAAGGAATACTTTGGAATAACCTTCATTGATGACACAGGCCAGTGCAATTGGCTGCAGCTGGACCGCAGAGTGCTAGAGCATGATTTTTCTAAGAAACCAGGCCCTGTTGCCTTGAAATTTCTAGTCAGGTTTTACATTGAGAGCATTtctttcttaaaagaaaatacgACGgtggaattattttttctaaatgctaAATCTTCCATCTACAATGGAGACATCGAAGTGGAAAGTGAACATGTCTTCAAATTAGCTGCTTACACCTTGCAGGAAGCTAAAGGGGACTATACAAGtgatgAATGTACAAGAGCTGACCTCAAGAAACTCCCAACTCTGCCCACCAAAGTCCTTAAGGAGCACCCCTCACTTGCTTACTGtgaagACAGAGTAATTGAGCATTACAAGAAGCTCAAAGGTATCACTCGAGGTCAAGCCATTGTACAgtatttaaCTCTAGTGGAATCTCTTCCTACATATGGTGTTCATTATTACGAAGTAAAGGATAAACAGGGAATTCCATGGTGGCTTGGAATCAGTTACAAAGGAATAGGTCAATACGATTTACAGGACAAAGTCAAACCAAGGAAGTTGTACCAGTGGAAGCAGCTAGAGAATCTCTACTTCCGTGAGAAGAAATTTGCTGTTGAGGTTAACGACCCCCACAGAAGAgctgtttcaaaatgtacttttggGCAGACTGGACTAGTGATCCACACATGGTATGCAACCCATTCTCTGATTAAGACCATCTGGGTGATGGCAATCAGTCAACACCAGTTTTACTTGGACAGAAAGCAGAGCAAAGCAAAAATAGCAACTGCAAGAAGTCTGGGAGATATTGCAATGGATCTGTGTGACACAGGTGCACCAAAGATTTCAAAACTGGGAATCATGGAAGGCAAGAATCCACTCATAATGGCCAGCAATGGAAGTCTGGTATCCTCAGGGTCTCAGGACTCTGAGGTCAATGACGagcagaagaaagagaagataTCTGAGctgaagaaaaaggagaaagatcTACAGGACATTCTCGCTCAGAAAATGGAGGAACTGAAGAAAATATGCTTGAGAGAAGCTGAACTGACTGGGCGACTGCCAAAGGAATATCCCTTTTCTGCGGGAGAGAAAGCTCCTCATGTGAGACGCCGAGTCGGAACCACTTTCAAACTGGATGACCTTTTCCCGTACAATGAGGACCCCGTTCTGCGCAATCTGGAGAGCAGATTTGCTCTGCAGCAGAAGATCGTTGAAGCTGCCAAGAAGTTAGCCAGCGAGCCCGAACTATGCAAAAcagtgaagaagaagaggaaacaAAACTGTCACGATGCCATGAAAAAACTCCAGCAGATCGAAGACGAAATTAATGAGTGCAGAATCAAAATCGGGAAGAGACCAACACAGCGAGCTTCCCTGGTTATAGCagATGAAGTGATCCCATCTGAGTGCAGTTCCCTGTCTGACAGCCTTACATTAGATGAAGatGATTCTGTTGGGGCTCAGCGACCCCGGTCGCGGTCTGTCCAGTATTCCCCCAGACCCAGTCCGCCACATTCTCTGAGCATCGAGTACTCGGAGAGAAGATCTTCAGCCTCTGACCAGCAGCATGACAAGAGCCATAACAGATACAATTATAGTGACAATATCCAGGAGCCCTTCCATTACAATCACAGAGAAGCCTTATCAACACACAGCAGTCCTTACAAAACTCCAGCCAGACAACCCCGGGACGCGAGGAGCATGCCACCCACGCCAGTCATGACACGCAATGCCTACAGCAGCAGCCAGCTGAGGTCTGAAGGTACTCCACAGCACTTAAGACAACGCAGCGGCAGCTTGGAATCGCAGACGCACCTCCTCTCAGAGGCCGAGCCCGAAAAGCCAATTTTCTCCCTCTCACCAGCCAGAAGGAGCAACAGCACAGAGGTCCTGGATGATGGGTCGTCGTACACAAGCCAGTCGAGTGTCGAATACATGAGCAGCCAGTCGAACCAGCATTACCGCACAGTGGACTCTCGCACGAGGGACAGGAGGCGGCACAAGAAGCAGAACATTTACGCCAACACGGGAAGCATGCCCAACTTGGCACAGAACGATTCCAGGTTCTGTGGCTACCAGACCAGACCCCATCCGACTTCCACTGCCTACTACGTCACAGGATACCCGGCTTACACAGACCCCGATCAGTACTCCGGTGGTCCATACATGTACGAAAATGAATCGGAGGGGCATTACAATGTGAATCCCTCGTACCGCACCTCAAACTATTACGGCCACGATCGATATGGCCGATACTACGAGGATGAGACAGATCACCTTTCCCAGAACCCATACGCGACAATGAGACCCCCCAGGAGCAGGCCGGGGGTTAAAAACGAACATATTAGTAAAAATATCCAGAAGGCACTGGTGGCCGAGCATCTCCGCGGCTGGTACAACCGCAACACTGGGCACCGAGACCAAGGAAGCAGCCTGCAGGCAGGCTATGAGTATGACAGAGGATCGCAGCAGAGTCTGGGCTACCCCTCTATGCAAGTGCCCTTCTGCCACGCGAGCCGGGCACCGTCCTATTCGtcagtttcttCAGCCACTAGCACAGGAAACTGGAGGAGTCACTTAGCCGTGGGTCTCACAGAATATGACGTCCCCTTATCTGCACCACAGCCTTACCCCAGCTCTTACAGCACTGCCGGCACCAGCACGCCCTCCCACAGCAGatcGTATATAGATGTGAACGAAGTGGAAAACGCCACAAACAGCCAAATGGAAAGCAGCTTAGATGCTGAAGACCAGATGTTATACTGGCATGAGGATTCCAAGCCTGGAACAATA

Function

GO: NA

KEGG:

id description
K23970 FRMD4; FERM domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22899 lncRNA upstream 76240 46930581 ~ 46930895 (+) True G18464
TU22897 lncRNA upstream 86589 46918346 ~ 46920546 (+) True G18462
TU22862 lncRNA upstream 398753 46605530 ~ 46608382 (+) True G18430
TU22852 lncRNA upstream 442933 46563970 ~ 46564202 (+) True G18420
TU22815 lncRNA upstream 634729 46371967 ~ 46372406 (+) True G18386
TU23000 lncRNA downstream 442237 47478978 ~ 47479256 (+) True G18538
TU23063 lncRNA downstream 817651 47854392 ~ 47854658 (+) True G18582
TU23088 lncRNA downstream 1025658 48062399 ~ 48065018 (+) True G18607
TU23215 lncRNA downstream 1285522 48322263 ~ 48326805 (+) True G18722
TU23309 lncRNA downstream 2170067 49206808 ~ 49211256 (+) True G18791
AMCG00017124 mRNA upstream 114668 46853928 ~ 46892467 (+) True AMCG00017124
AMCG00017123 mRNA upstream 198469 46772475 ~ 46808666 (+) True AMCG00017123
AMCG00017118 mRNA upstream 385358 46610716 ~ 46621777 (+) True AMCG00017118
AMCG00017119 mRNA upstream 406418 46599760 ~ 46600717 (+) True AMCG00017119
AMCG00017117 mRNA upstream 498599 46506327 ~ 46508536 (+) True AMCG00017117
AMCG00017127 mRNA downstream 4136 47040877 ~ 47044679 (+) True AMCG00017127
AMCG00017130 mRNA downstream 15657 47052398 ~ 47060586 (+) True AMCG00017130
AMCG00017128 mRNA downstream 25086 47061827 ~ 47072175 (+) True AMCG00017128
AMCG00017129 mRNA downstream 35978 47072719 ~ 47083518 (+) True AMCG00017129
AMCG00017133 mRNA downstream 53628 47090369 ~ 47164242 (+) True AMCG00017133
TU22550 other upstream 2351037 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 2875533 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 4609348 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 8503503 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 12906272 34100315 ~ 34100863 (+) True G16550
TU23388 other downstream 2365978 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 2676783 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 3515139 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 3522709 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 5777512 52814253 ~ 52817098 (+) False AMCG00017280

Expression Profile