RNA id: AMCG00017146


Basic Information

Item Value
RNA id AMCG00017146
length 919
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00017146
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48148754 ~ 48158397 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTCAGCAGCTCTTAGAAACGTGACCGGCAGGAGCGGCTTCCTCTCGGCGCTTCCTGGTGCGCGTCTGTGCGTCTGTGCGTCTGCGCGGCCGGCGGGCGGGCGCAAGTCTGATTCAAAGAAAGATAGCAAATGTGCAGCAGGGACTTCAAAAGATCACAACGcttTTCAGAAGTCATCTAAATGCAAAAGCAGAGAACGGGAGGTTGAGTCCATCTTCTCACTGAAGGTCACCCAGGAAAATGATGCCCTCTGCTACAAAGAGTTTCCACGTCCTGCTGTGAGAGCAGCGCTGCGAAACAGAGCTATCCAGCGAAAGAGGAGAGAGATTGAAGAGGTATACAGACAAGACTGTGACACCTTTGGAACTGTGGCAAAAATGCTGATTGCAAAAGACCCGTCTTTGGAGAAACCGATTCAGTTGTCTCTTCAGGAAAACCTACAAGACATTGGTCTGCGCTGTGCGGAGGCCCTGCAGCGCTTCATTGAGGAACATGATTCGAAACAATCCAGCAGCTCTTCACTGTCTCAGCCTTAGCCCTGCGTATGTAGATACTGCACCTTTTCAATTGTTGGTAAAAGGGtgtagaatgtatttttttctggacaATCCTTTCACCTTTTTATGTGCTTTTTGTCATGTAACCTAATTGTCCCCAACATTTGGAAGATAGGGCCACCAAGGGTCCTAATGACAACAGCATTCTTCCAGCAGCCAACTCCTTGTGTATAAATTGCTCTGGTTATGCTCAGCCCATCCAACACATcctctagagcaggggttttcaaactggtcctggtgtaccccctgccctgcttgcttttgttccaactgaggtcttaattacttaattgaatccttaattgaccttacaaagcaatataccattcaattaagtaattaagacctaggttggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23134 lncRNA downstream 83715 48062312 ~ 48065039 (-) True G18652
TU23133 lncRNA downstream 94132 48054208 ~ 48054622 (-) True G18651
TU23024 lncRNA downstream 521233 47627263 ~ 47627521 (-) True G18559
TU22995 lncRNA downstream 720669 47426247 ~ 47428085 (-) True G18533
TU22990 lncRNA downstream 759933 47387898 ~ 47388821 (-) True G18529
TU23178 lncRNA upstream 11761 48170158 ~ 48171110 (-) True G18690
TU23194 lncRNA upstream 65653 48224050 ~ 48224318 (-) True G18702
TU23201 lncRNA upstream 74293 48232690 ~ 48237413 (-) True G18709
TU23365 lncRNA upstream 1202271 49360668 ~ 49360937 (-) True G18827
TU23366 lncRNA upstream 1203263 49361660 ~ 49361926 (-) True G18828
AMCG00017141 mRNA downstream 182163 47965527 ~ 47966591 (-) True AMCG00017141
AMCG00017139 mRNA downstream 426494 47669761 ~ 47722260 (-) True AMCG00017139
AMCG00017136 mRNA downstream 598156 47542093 ~ 47550598 (-) True AMCG00017136
AMCG00017137 mRNA downstream 607723 47522782 ~ 47541031 (-) True AMCG00017137
AMCG00017132 mRNA downstream 1097348 47047273 ~ 47051406 (-) True AMCG00017132
AMCG00017145 mRNA upstream 2006 48160403 ~ 48169675 (-) True AMCG00017145
AMCG00017149 mRNA upstream 16815 48175212 ~ 48212486 (-) True AMCG00017149
AMCG00017153 mRNA upstream 58242 48216639 ~ 48217459 (-) True AMCG00017153
AMCG00017150 mRNA upstream 66767 48225164 ~ 48232148 (-) True AMCG00017150
AMCG00017152 mRNA upstream 81687 48240084 ~ 48241492 (-) True AMCG00017152
TU22128 other downstream 5284138 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 6931523 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 10089815 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 10089815 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 10390283 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 330730 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 3272458 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 3287190 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 3287190 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 3697849 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile