RNA id: AMCG00017148


Basic Information

Item Value
RNA id AMCG00017148
length 2223
RNA type mRNA
GC content 0.38
exon number 4
gene id AMCG00017148
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48249354 ~ 48261026 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTTGCAATTTTTGCATTTGCAACATGTGGAGGATACTCTGGCCAACTGCAGGTCAGTGTCGAATGTGTGAACAAGACGGACAGCAACCTGAGTATTGGGATAGAGTTTGCTTATCCTTTCAGGTTGCACCAGGTATATTTTGATGCCCCCTTGTGTGAAGGAAAAAGACGAGAGCGGCTTTTCCTAATAGGAGACTATTCTTCCTCAGCCGAGTTCTTTGTCACCATTGCCGTCTTCGCCTTCCTGTACTCGCTGGTGGCCACTGTagtgtacatttttttccagaacaAGTATCGAGAGAACAACAGAGGACCACTGATTGACTTCATCGTGACGGTGGTGTTCTCATTCATGTGGCTCGTAAGTTCTTCGGCCTGGGCTAAGGGCCTGTCTGATGTGAAGGTCGCCACAGACCCTGACGAAGTACTCCTCCTCATGTCTGCCTGTAAGgtccaaaacaacaaatgtctGTCTCTCCGAAGCCCTGTATGGTCAAGTCTAAATACATCTGTGGTATTTGGATtcctaaactttattttatggGCTGGAAACATTTGGTTCGTCTTCAAAGAGACTGGGTGGCATTCCTCTGGACAGAGATATCCTTCTAGCACCACAGAGAAACAACCCAGTGGCTTTAACCAGCAACCCTACAACCAAGGCGGGTATGAGCAAGAAAACTTTGGCCAATCCGGTGGGTACAATCCACAAGGAGAGTACGGCCAGCAGTCAAACTACAGCCAGGTGGGCAGCTATGGCCAGGCCGGCTATGCCCCCAGCGGGCCTACTTCCTTTGCCAATCAAATGTAACGCCCACATCTTGGccaatactgtattttaaattgcatagcTTGAGAGAGCACAGGGTTATGAGCTGGAGTCTAAATTAGACTACTCTGTGACGGAGTGTCTTCTTCTGTTGTTAGTAGTCTCGTGACAAGAAGGCTGTGGTTCTTGTTCGTGAAAATACAGCATATCTAGTTTGTAGGTAGAGAACATAATGTTACCTTGGGGCGGCGAAACCTGAACTCaatattttaagtattgtaCAAATCAAATTGTAATTCTTTATTTGCAGCTTCActctattaacatttttgaatgtTGTATTGCAGTAGTTTCAGGTGTTCGTAAGCAATTTCTTTTCTGTGTGGTGCTTCACCACAGATCTTTACGGTAAGTATTTTTGAACTGTTTTGCACTCTTGTGAAAGACAATGTggtaatttgtatatttatagaagattattatattgtgttaaTAAAGTGCatgattttgtgcatttaaagtTCTAACTATGCCTGTGTGCACATTTGAGTAATTTTATAAGTGGTAGTGCCGACAGGATTTATCAGATTCAAACTGAAATAAGGAGGTTCTATTTAAGATTTATTCCTTGTTATTTTACCTTAGTctaagtgttttttaaaaattatttaaaatattcttttttttaaatatcctaatatattttcctaatgtttatttcatttcaaaaaaTTTTGAAGCACTCAAATTCTGCTTAAAAAGAAAGTTCCCTTTTCTTGTAAATCAATGGTTTTATTGCACACACGCCTGTCATTAAGAAGGAAATctctgttgttgatgttttgtgACTATTTCGATGTTAGTGTTTATACTTGTTAAAGGAGCGATTCATTGTATCCTCTTTGTTTACAAATGTACTTTCATAGGATTTTAATAAGAAcaggtgtttaaaaatatgctgCACTCAAACTGCTATAAAATAGTAATGCTTTTACAAAGCACATATGGTGCAGGTAAAAGgaaatgagaaattgaacaacAGATGTCCAACAGCATTAATAatagattaatgtatttatatgtgaaCAGCAAAGCCCATGAGTGTTATCTTCCGTTTTTGAACACCACCAAATCCAGATTCATTGCATATTAGAGAAACCTGAGTGTGAAAAATCAGATGTACCTATTTATGAATGAGGTTTATATAATCAAGTTTctgtgataaaaaataaaataaatacataagttgTAAGTTTGTAACTTAAGATTTTCTTATTGTGCAACCTTGTTTTTTGACTTCCAAAGCATGTGGCTCAAATCATCACAGTAACTGCGTTTGTTCAACGAGATTATATACCATTTCTGTATTTGCTCTGCGGTCGGTGTTACATTATAATGTGATAAAGTTGGAGTTTACTTGTTGTAATCTGTATACGATTACTCAGTGTGAAT

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23201 lncRNA downstream 11941 48232690 ~ 48237413 (-) True G18709
TU23194 lncRNA downstream 25036 48224050 ~ 48224318 (-) True G18702
TU23178 lncRNA downstream 78244 48170158 ~ 48171110 (-) True G18690
TU23134 lncRNA downstream 184315 48062312 ~ 48065039 (-) True G18652
TU23133 lncRNA downstream 194732 48054208 ~ 48054622 (-) True G18651
TU23365 lncRNA upstream 1099642 49360668 ~ 49360937 (-) True G18827
TU23366 lncRNA upstream 1100634 49361660 ~ 49361926 (-) True G18828
TU23367 lncRNA upstream 1102723 49363749 ~ 49364302 (-) True G18829
TU23368 lncRNA upstream 1104180 49365206 ~ 49366441 (-) True G18830
TU23369 lncRNA upstream 1106455 49367481 ~ 49368062 (-) True G18831
AMCG00017152 mRNA downstream 7862 48240084 ~ 48241492 (-) True AMCG00017152
AMCG00017150 mRNA downstream 17206 48225164 ~ 48232148 (-) True AMCG00017150
AMCG00017153 mRNA downstream 31895 48216639 ~ 48217459 (-) True AMCG00017153
AMCG00017149 mRNA downstream 36868 48175212 ~ 48212486 (-) True AMCG00017149
AMCG00017145 mRNA downstream 79679 48160403 ~ 48169675 (-) True AMCG00017145
AMCG00017151 mRNA upstream 62789 48323815 ~ 48345751 (-) True AMCG00017151
AMCG00017158 mRNA upstream 231941 48492967 ~ 48494407 (-) False AMCG00017158
AMCG00017159 mRNA upstream 242892 48503918 ~ 48559435 (-) True AMCG00017159
AMCG00017160 mRNA upstream 323450 48584476 ~ 48587639 (-) True AMCG00017160
AMCG00017168 mRNA upstream 1040936 49301962 ~ 49318919 (-) True AMCG00017168
TU22128 other downstream 5384738 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 7032123 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 10190415 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 10190415 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 10490883 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 228101 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 3169829 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 3184561 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 3184561 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 3595220 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile