RNA id: AMCG00017159


Basic Information

Item Value
RNA id AMCG00017159
length 6778
RNA type mRNA
GC content 0.41
exon number 25
gene id AMCG00017159
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48503918 ~ 48559435 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aGATGCAACTATACTTTTACAATTCAGATGATTTTGACAGCGTTAATACAGCGATTAAGGAGAAACGAATCATAGCTGCAATGGCTGTGTTTTTTCAGGTTGGGCATAAGGACAATCCGGCAGTGCACCCGATTATCCATGGACTGAAAGGCGTCGTTCATCATGAGAAGGAAACCTTTTTGGATCCTTTTGTGCTGAGAGACTTACTGCCTTCATCACTTGGGAGCTATTACCGCTACACTGGTTCGCTGACAACCCCCCCATGCAGCGAGATTGTGGAGTGGATAGTCTTCAGCAGACCAGTGTTTATCTCCTATCAACAGCTGGAGGctttttattccatatttacCACCGAACAGCAAGACCACGTCAAATCCGTCGAGTACTTGAGGAACAATTTCCGACCGCAGCAGAGTCTAGACGACAGGGTGGTCTTCAAATCCGCCATCAAAGACGCCTGGATACAGGACCTGACAGACAGTCTTGGGAATCCACATGGAACTGAAGCTTCGAAAGTTTGCAGCAGTGCCCCTATCAATATGAAAGTCCAGCCAATAAACAGAACCGCGTTGGTGGTGAGCTGGAATAGACCCGAGACAGTCTATCACCCTCCCATCATCAACTTCATGATCTCGTACAGCTGGACCAAGAATGAAGAAGCCAATGAACAAACGTTCGTCAAAGACAGTGACCAGGACCTGGAGGCTGTCATCAACCATGTGTCGCCAGATATTTTGTACTTGTTCAGAGTCCAAGCAGTGTGTCAGAACGACATGAGAAGTGACTTCAGTCAGACAATGCTTTTTCGGGCAAACACCACGAGAATATTTGAAGGCACAAGAATAGTGAAGACTGGAATGCCAACAGCCTCTCCTGCTTCTTCAGCCGACATGGCGCCCATCAGCTCTGGATCTTCGACGTGGACATCGTCCGGCCTCCCTTTCTCGTTTGTGTCCATGGCCACTGGAATCGGACCCTCTTCCAGTGGGAGCCAGGCCACGGTGGCATCCGTGGTGACGAGCACTTTCCTCGCTGGCCTGGGCTTCAGCGGGGGTGTGATTTCTTCCTTTCCCAGCTCTGTCTGGCCTACCCGCCCTCCCCCTGCGTCGGCTGCTACGAAACAGTCTGTGAAGCCCGTCGTGCCCACTACCGAGGTGGCGTCCTCCCAGGGCTCGGACGGTGACACCGTGACCAAAGACAACGAGGGGGCGGAAGAGGGCGAGAAAGGCGGCAAAGGGGAGGGCGAGGACGGCGAGcgggaaggagaggaggaggaagagggagaagaggGAAGCGAGGTCAAGGAGAAGAAAGTGGCACCGGACGATACGGAAACTCAGGAGAACAAGACGGAAGCGAAGGTGCCCACCGTGGCATCTCCGGCCTCAACGGCAAAAGAGAAAGCAGGGGAGGAGACGGGCGCCGAAACTGGGGAGACGAAACCAAATGCCAAGCCAACGGGAAGAGTTGAAGACCAGCTCGATGAAGGTAAACATGGCCCCCTGGAAGTGGATACAGTACCTCCTACACAGGAGTCATCTAATGATACGTCTGAAAGAGAGTTACCGGGTGAGGATTCGGATTTTCCCACACTGACCACCAAACCAAACAGCAAAGAGAAGAATGATTGGCCTTTCTCAATTCATACAGAAAGAAATAGTATTTCCAACATGACAAGAAACCCATTATATGCTTCCAACAAGATGGAGTGGATCATCCCTTTGGTGGTCGTGTCGGCATTGACCTTCGTGTGTCTTATCCTCTTGGTGGCTGTGCTGGTGTACTGGAGGAGGTGTTTTCAAACCGCACATTTCTATGTGGAAGACAGCAGCTCACCCAGAGTGGTTCCCAATGAGAGCATCCCGGTCATCCCAATTCCTGatgaCATTGAGGCTATTCAAGTCAAGCAGTTTGTTAAACACATCACCGAGCTGTATTCGAATAACCAGCATGGATTTTCAGAGGATTTTGAGGAAGTGCAGCGATGCACCGCTGACATGAAGATCACTGCAGAGCACTCCAATCACCCCGACAACAAGCACAAGAACAGATACATCAATATCGTTGCATATGATCACAGTAGGGTGAAGTTACGACCTCTGGCTGGAAAAGATGCAAAACACAGTGACTACATTAATGCAAATTACGTGGACGGTTACAACAAGTCAAAGGCTTATATTGCAACGCAAGGGCCTCTGAAGTCGACGTTTGAAGACTTCTGGAGGATGATATGGGAGCAGAACACTGGAATCATTGTTATGATCACAAACCTGGTTGAAAAAGGAAGAAGAAAATGTGATCAGTACTGGCCGTCAGAGAACAGCGAGGAATACGGAAACATCATCGTCACACTGAAGAGCACAAAAGTACACGCCTGCTACACCCTGCGGCTTTTCACAATAAggaatacaaaagtaaaaaagGGTCAAAAGGGGAACCAAAAAGGACGGCAGAACGAGCGGATGGTGATTCAGTATCACTACACACAGTGGCCTGACATGGGCGTGCCAGAGTATGCCCTGCCCGTTCTCACCTTTGTCAGAAGGTCCTCTGCGGCCAGGACAGCAGACATGGGACCAGTGCTGGTACACTGCAGTGCTGGTGTTGGTAGAACTGGAACATATATTGTAATTGACAGCATGTTACAGCAGATAAAAGATAAAAGCACAGTCAACGTCCTAGGTTTCCTCAAACACATCAGGACACAGCGCAACTACCTCGTCCAGACTGAGGAGCAGTACATCTTTATCCATGATGCCTTGCTGGAAGCTATCCTTGGCAAAGAAACAGAAGTACTTGCCAGTCAGCTGCACGGCTATGTTAACAGCATCCTCACCCCAGGGCTAGGTGGAAAAATGCGCcttgaaaagcaatttaagCTGGTGACACAGTGTAATGCGAGATATGTGGAGTGCTTCAGCGCCCAGAAGGATTGCAACAAAGAGAAGAACAGAAACTCTTCTGTAGTGCCATCGGAACGTGCAAGGGTCGGCCTTGCTCCACTTCCTGGAATGAAAGGAACCGATTACATCAATGCCTCCTACATAATGGGTTACTACAGGAGCAACGAGTTCATCATCACACAGCACCCCTTGCCTCACACTACAAAAGACTTCTGGCGGATGATTTGGGACCACAACGCACAAATCATTGTCATGCTACCAGACAACCAGGGCTTGGCTGAGGATGAATTTGTGTACTGGCCAAGTCGTGAGGAATCCATGAACTGCGAGGCCTTTACCGTTACCTTGATCAGCAAAGACAGGCTGTGCCTCTCAAATGAAGAACAAATCATCATCCATGATTTTATCCTAGAAGCAACACAGGATGATTATGTACTAGAAGTTCGCCACTTTCAGTGCCCCAAATGGCCAAATCCCGATGCTCCTATTAGCAGTACCTTTGAGCTTATCAATGTAATCAAGGAAGAGGCCATGACCCGTGATGGACCAACCATAGTGCATGATGAGTTCGGTGCGGTTTCGGCTGGAATGCTTTGTGCCCTTACAACCTTATCTCAGCAACTTGAAAGTGAAAATGCTGTGGATGTTTATCAAgAACAGTACCAGTATCTTTACAAAGCAATGCTCAGCTTGGTCAGCACTAAAGAGAACGGAGCGGGCCTCATGTCAATGGACAAAAATGGCACTGTTGTCATAACGGATGAATCGGACCCTGCAGAAAGCATGGAGTCTCTTGTTTGAAGATTGAAAACCTTGAAGAGGCACTTAATTTGTAAAACTCTAAGGACTAGGCAGACTTTTTTGAGGCCTTTTTTGCCAGACtcttggttaaaaaaacaaaacgaaaaaaaaaacggaTTACTTTTTTACACTGATAAAAAgtttttgatatttatttttgccattttatGTCTTAATGTTATCCTACTGAGCATTTGCACCTACGTTTAATTtcacacaagaaaacacaattttttcTAGTTTGCACTATATTATCAGTGTTACTGCCTATAATAATCCAATCAACAATATTGGTAATCAAGCCCTAATATAACATTCCATGGCAACGCTCAGCTCGTTCTTTCTCAAATAATTTGGAATAAGAAGCATTGACAGTTTATTACCAACAGTTCACTATAGTAAAGACAAACCCGGGGGATGCAGTCAGTACAGCTGGGACTGATTTTTTGCAATCTATTTAAATACGTTGTATAACATTGCAGAGCTTAAACAAGTCATGGCTCACTGTGGGGAACCGACACTTTTGTTGTGTACAGAAGGACAATGtattcttgttttgctttgaaatttACCATTTCTATAACACCTACAGCAATAGggtcatttttttgtattctaatattaatttgatttttcttctcataacctgttattttttaactcgAGCCCATATTTTAAGTATAAACAGGTggtataacaataataataataaaaaaaagaaaactactgTGAAGTTAGACATTTTTAGTTGTCcgtattttcctttctttttatatacCAAATAATTTTAACTTCTACTTTTTTAAGTGTCTATAACCTTTGCTACCCCCCCTAATCCCAACCCAGAAATAATGATGTAACAGTTGGAAAAACTTCAGTCCTAAACAAAAGGTTGATTGAATCAAGGTTTTAGGTTTAATACACTCAGAATTTATCATGGGTCCGATTTGTTAAAGCATAAATAACAAAGTATttcagcttttgtttgtttgtgcactGTCCCCTTGCAATTTTGTAATGTTGCTACTTGCTCTGGtccttattttgcttttttttcatgtaatgttACTAGCAGCGATGGAAGCAATATTTTAGGGTCCATTTTGAATCTAAAGGAACCAAAAGAAGCCAAATCCATGTCCATTAAAACTTGTTCTGTACTtggcaatgaaaaacaaactacaagTGGAAACTCAATACATGAGCAACAGCACATGGACATCTTCTAAAGACcctaaactgtttttaaagttcCTTGTAAAATCTAGGCATTAAAGCCacagctttttttccccatgaacAAGATTTGTTTGAGATTAAAGaagtattttttcatctttggTGTAATTCAAGGTTTTTCCCCTCCCAATATTGTtagctttttatgtttttggtttgtttaatcaTGATATCATGCTAACTGTTATTACAAGGTGGTTTTGCTACTAAACATTGTGGCCTGTGTACAGTGGCAACTCATCAGCTTGCATGTTCAAGACTATGTCACAGAATAAGAGTGAATTCTCTGCCCCGGAGTCCGTAggtgactgttttgttttttggttcttgttgtcattgtttttaaaccattccAGCCCTttatccatgttttttttaccaAGTTGCTTTAGGCACATGCTAATTAGAGTCAAATAATGCCTTGAATCATTCTTTGCCTCAAAAGGGTGTCTGGTTGTGAACACTTTGGTATTTAGGCAAATTAAGTGTGATGTTGAATTTTAAActtcaagaaaaataagttcCTGTTAACCATACAGCACAACTGCCTTGGTATTAGAAATTCtgtgttgtatttctttaaagaaataaaaaaaaaaaatggaaaacaaatattggggaaaaaatagaATCAACTTTACCAAAGATATATACTTACTTTCAGAAAGGAAAAgagcttttgttttgctaatgtttctgtttaacattttttcacTCTCAGTAAATGACTGGGAGAAATTTCAGGTTTGCTCGACATTCATTTGTTTCCTGGCAGTAATTTTATAATGCCAATGTTttgccaaaacatttttttttcttctgtttatacATAGGAATCTTAGTACATGCTTACtaatatatttcctttcatgTAACTGAATATGTCATTAACTGGTAAACAGCACATTCAAAGCCTTTGTGCTTACTGCTTCAGTTGCTCTTAAAAAGTTGATGTTTTGTCACACAAAAAGCAAGATATAGCCTTTCATGTGAGGGTgtgaataacaataacaattaccAGATGTAATCTGTTGTAAACCCTACATTCATAATCATACTAAATGGATCTATAAGAAAACCGCGTGCTTAATTCTTCTGCAAAGGGAGACGTTTTCTACATCAGAAAATTCCTTTAGAAACTCAAAATAGGAAATTAAGTGaagcattcttttttctttttctttttggtctcCCAATGAGgagatatttaaatgaaagtcACAACTCTCCAACATTTGGGGTAGTGACTTGACTCTTGATTATTTGTTAAAGACTTGTAGGCTAActagtaactttttttttttttttttcataaccgATTGAGCAAAGTTGCTTAAATCATTCATTCCTTTGATTCCATTTTTAACAGTAGTGTGTATCATAAATAAAATTCTGtacatattttgttgctttaataaCCATCTTCTGAAAACTTTGTATCTATGGTATATAATCAtagaattttatattttcatataaagctattttttttctagtttcaACTCCTTCATAGTTTTTGTGGTGGATATGTGGAAGCAAAGTCTCCGTGCATTGAAGTAGTGAATCATCACATTCCAATACAAATCCACGCGTACTATAATTTTTGAGGCAGTGATTGTGAAActtggattttttgttttgtttttatttttttgtttgttttgttatttttgttcttatttttttacagttctgTTGTCAGTGTGCAATAGGAATAGATCTAGCCAGTCACTGAATAAGTTTGTCTCATTGacccatttgaaaaaaaaatgtgggtgTTCCTCCTCTTTTgtaacttgaaaaaaaaaaaaaaaaaaaaaaaagttttgttgaAA

Function

GO: NA

KEGG:

id description
K16667 PTPRG; receptor-type tyrosine-protein phosphatase gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23201 lncRNA downstream 266505 48232690 ~ 48237413 (-) True G18709
TU23194 lncRNA downstream 279600 48224050 ~ 48224318 (-) True G18702
TU23178 lncRNA downstream 332808 48170158 ~ 48171110 (-) True G18690
TU23134 lncRNA downstream 438879 48062312 ~ 48065039 (-) True G18652
TU23133 lncRNA downstream 449296 48054208 ~ 48054622 (-) True G18651
TU23365 lncRNA upstream 801233 49360668 ~ 49360937 (-) True G18827
TU23366 lncRNA upstream 802225 49361660 ~ 49361926 (-) True G18828
TU23367 lncRNA upstream 804314 49363749 ~ 49364302 (-) True G18829
TU23368 lncRNA upstream 805771 49365206 ~ 49366441 (-) True G18830
TU23369 lncRNA upstream 808046 49367481 ~ 49368062 (-) True G18831
AMCG00017158 mRNA downstream 9511 48492967 ~ 48494407 (-) False AMCG00017158
AMCG00017151 mRNA downstream 158167 48323815 ~ 48345751 (-) True AMCG00017151
AMCG00017148 mRNA downstream 242892 48249354 ~ 48261026 (-) True AMCG00017148
AMCG00017152 mRNA downstream 262426 48240084 ~ 48241492 (-) True AMCG00017152
AMCG00017150 mRNA downstream 271770 48225164 ~ 48232148 (-) True AMCG00017150
AMCG00017160 mRNA upstream 25041 48584476 ~ 48587639 (-) True AMCG00017160
AMCG00017168 mRNA upstream 742527 49301962 ~ 49318919 (-) True AMCG00017168
AMCG00017170 mRNA upstream 810141 49369576 ~ 49370958 (-) True AMCG00017170
AMCG00017169 mRNA upstream 817088 49376523 ~ 49383368 (-) True AMCG00017169
AMCG00017175 mRNA upstream 844687 49404122 ~ 49447336 (-) True AMCG00017175
TU23267 other downstream 9569 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 5639302 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 7286687 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 10444979 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 10444979 38054665 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 2871420 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 2886152 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 2886152 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 3296811 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 4299155 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile