RNA id: AMCG00017169


Basic Information

Item Value
RNA id AMCG00017169
length 2164
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00017169
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49376523 ~ 49383368 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGGCCGAagcTAAAGAGAGCAAGTAAGCGATTGACATGCTCCAAAcgatataaaatacagaaaaaggttCGTGAGCacaacagaaaactaaaaaaagatgcaaaaaagaaaggaacaaaaCGGGTAAAAAAAGATCCCGGGGTTCCCAATAACGCTCCATTCAAAGAGGAGATTCTCAGGGAAGCAGAAAGCAGGAAGCTGAAGCTTGAAGAactaaaagagaaaaagaaacttGCGAAACAGAAGGAGCGAGCGAAGAAAAGAAAAcgagaagcagaaaaaaatgacCCAGAGTCTTCTgctaaaaaagcaaaaaagGAGAAACCTGCACAGCAGCCAGTGAAAGCAGCCAACGGTAATGATAAAAATGCTCAAAACTATGCTCAAGCTGTAGAGTTGAACAAGGTCATTGATGCCTCCGATGTCATTGCTGTAGTTCTGGATGCCAGGGACCCTCTTGGCTGTCGATGCCCACAGTTGGAAGAGAAAGTATTAAAGCATGAAGGAAACAAGAAACTTGTCTTTGTGTTGAATAAAATTGATTTGGTGCCTAAAGAGAATGTGGAGAAATGGCTGGAATATCTTCAGGAGTTCCCAGTTATCGCTTTCAAGGCATCAACACAGATTCAGGAGAAAACAGTGCAAGAGAAGAAGCGAAAAAAAGCCAATGGAGCTATTGATTTAAGTAAGGGTGTTGCCTGTCATGGGAGCGGCAGTCTGCTCCAGCTTTTCGAAGACTATTGTCAGACGCAGAAGGAAGGGAATCAACTGAAGGTTGGCATTGTGGGCTTCCCCAACGTTGGGAAGAGCAGTCTGATAAACAGTATGAAAGGAATCCGGGCTTGTAATGTGGGAGTGGAAAGAGGAACTACAAaATGTGTGCAAGAGGTACACATAAACAAATTCATCAAGATGATTGACAGTCCCAGTATCATTGCGGCTCCATCCAgctctgctgttgctttggCGCTGAGGAGTTTACCAGAgactgaaaaggaaagaaacccTCAGGATGCAGTCAGAGCCCTTCACAAACACAGTGATAAACAGCAGATCATGCTTCAATATAATGTACCTGACTTCAGAAACGCTCTGGAATTTTTGACGTTTCTTGCCAAGAAACGAGGGTATTTGCAGAAAGGTGGCATTCCAGATACAGAGAAAGCTGCAGCGATCTTTCTGAATGATTGGACCGGGGCTAAAATGAGTTATCATTCTAAACCACCCGAGGAACATGAGCTTCCACCGTACCTCTCCGACTCCATGGTGGCGGAGATGCAGGTGATGTGGAGTGTGGACAAGCTGCAGCAAGCCAACGTGAAGACCATTGCTGGGCTGAAGTTTCCCAATATAGCAAGCAGCATTTTGTTCCAGTCCAAAGGCCCCACGCCTGGCCTTGTGAACGAGAGAGAACTGAGTCTGGCACTGGAACCAGAGGAGGCAGTGGCCGAAGACGacagtgaggaagaggagCCTGAATTGGTTCCAATTGTGcctgaaacacaaaaaggaCTTCAAgagcacaaacaaaagagaCCATTAAAAGCAGAGACTTCGGCTGAACCACCGAAAAAAGCAAATGCAGGAGTTCCACCCAAACTGCAAATAAGGCAGATGCCAGTTAGCATCGATTTTTCTTCAGCAGAGCAAGATGATGATGCATATGACTTTAACGCCGATTTTAATTGACAGTATTACCAGTCACTTGAGTTATGCCAATGCTGGTGAACAAAGCAGACTTACTAAGTAAGGTTTAAGTTGTGTGTCAATGCATGCAACACCAGTATAATCCTAACAGCTATTTACCTGTGTAAATAACTATGTGAATTATTGTACATATCCTTAAAGCATACGCAGCCATGTAGTTTAAGGGTTTCCAACATTTGTCCTGGagtactctgtgtgtgtgcaggttttTGATCCAACAGCGTttgtaattacttaattgaacccttaagtAAACTAAAGATGCATATCTAGACCTTTTTTGGTTCTTAGTGATAAAGACTTAAAGCTAGCGGTTGTAAATTGAAGTGTAAGGACCTGAAGATAACGAAAATATTTCTTTAAGCATATTTGGTAATAACTTGGTTTAAGAGTAACTAAAACAAGCAAAAGATAATACTTCCTAATGGGGATTTTTAAACCCCATTTTTTT

Function

GO: NA

KEGG:

id description
K14538 NUG1, GNL3; nuclear GTP-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23370 lncRNA downstream 6972 49368618 ~ 49369551 (-) True G18832
TU23369 lncRNA downstream 8461 49367481 ~ 49368062 (-) True G18831
TU23368 lncRNA downstream 10082 49365206 ~ 49366441 (-) True G18830
TU23367 lncRNA downstream 12221 49363749 ~ 49364302 (-) True G18829
TU23366 lncRNA downstream 14597 49361660 ~ 49361926 (-) True G18828
TU23442 lncRNA upstream 106318 49489686 ~ 49493305 (-) False AMCG00017178
TU23444 lncRNA upstream 106318 49489686 ~ 49494144 (-) True AMCG00017178
TU23513 lncRNA upstream 324298 49707666 ~ 49709260 (-) True G18945
TU23536 lncRNA upstream 341829 49725197 ~ 49725675 (-) True G18961
TU23537 lncRNA upstream 342952 49726320 ~ 49726935 (-) True G18962
AMCG00017170 mRNA downstream 5565 49369576 ~ 49370958 (-) True AMCG00017170
AMCG00017168 mRNA downstream 57604 49301962 ~ 49318919 (-) True AMCG00017168
AMCG00017160 mRNA downstream 788884 48584476 ~ 48587639 (-) True AMCG00017160
AMCG00017159 mRNA downstream 817088 48503918 ~ 48559435 (-) True AMCG00017159
AMCG00017158 mRNA downstream 882116 48492967 ~ 48494407 (-) False AMCG00017158
AMCG00017175 mRNA upstream 20754 49404122 ~ 49447336 (-) True AMCG00017175
AMCG00017174 mRNA upstream 72126 49455494 ~ 49477304 (-) True AMCG00017174
AMCG00017178 mRNA upstream 103829 49487197 ~ 49493167 (-) False AMCG00017178
AMCG00017177 mRNA upstream 196221 49579589 ~ 49589402 (-) True AMCG00017177
AMCG00017180 mRNA upstream 260779 49644147 ~ 49653221 (-) True AMCG00017180
TU23267 other downstream 882174 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 6511907 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 8159292 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 11317584 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 2047487 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 2062219 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 2062219 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 2472878 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 3475222 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile