RNA id: AMCG00017170


Basic Information

Item Value
RNA id AMCG00017170
length 524
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00017170
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49369576 ~ 49370958 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTCATTCACTACGTACCCTTAAGTAAAACAGGAAGACGCTCTCTCCCCCATCGTCTTTCAATATACTGTTATTTTGTAGTTTCCGTTGATATTTTATAGTCTGCAAGGGTTTCATAATGCTGTCGATATTCAATTCTATCCCCACACATATGGATTACAAAGGACAGAAACTAGCGGAGCAGATATTCCAGGGTATCATACTTGTCTCAGCCcttaCTCTGCCCCCCTGGCCTATGTACCGCAGACATCCCTTGACATGGCAACCTGTGCAGCCCGAGTCGTCAGGAGAGACCAGAGAGAAGCCACAGGAAAACCTGAAGAAGCCCAAAAAGCACAAGTAGAGAATAACTGCCTTTTAGACACCTTCAAAAAATTTTGATATGTTAAAAGAATTTACTTTTTTCCTGGACCTTCGAatgcagatttgtatttgttgttactTTCCATTTGACCAGCAAAGTTGTCGGTAGTTAAATAAATTCCTGAAATGCTCAGACTTGTCACAGCTTCATTTTACCATAT

Function

GO: NA

KEGG:

id description
K12946 SPCS1; signal peptidase complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23370 lncRNA downstream 25 49368618 ~ 49369551 (-) True G18832
TU23369 lncRNA downstream 1514 49367481 ~ 49368062 (-) True G18831
TU23368 lncRNA downstream 3135 49365206 ~ 49366441 (-) True G18830
TU23367 lncRNA downstream 5274 49363749 ~ 49364302 (-) True G18829
TU23366 lncRNA downstream 7650 49361660 ~ 49361926 (-) True G18828
TU23442 lncRNA upstream 118728 49489686 ~ 49493305 (-) False AMCG00017178
TU23444 lncRNA upstream 118728 49489686 ~ 49494144 (-) True AMCG00017178
TU23513 lncRNA upstream 336708 49707666 ~ 49709260 (-) True G18945
TU23536 lncRNA upstream 354239 49725197 ~ 49725675 (-) True G18961
TU23537 lncRNA upstream 355362 49726320 ~ 49726935 (-) True G18962
AMCG00017168 mRNA downstream 50657 49301962 ~ 49318919 (-) True AMCG00017168
AMCG00017160 mRNA downstream 781937 48584476 ~ 48587639 (-) True AMCG00017160
AMCG00017159 mRNA downstream 810141 48503918 ~ 48559435 (-) True AMCG00017159
AMCG00017158 mRNA downstream 875169 48492967 ~ 48494407 (-) False AMCG00017158
AMCG00017151 mRNA downstream 1023825 48323815 ~ 48345751 (-) True AMCG00017151
AMCG00017169 mRNA upstream 5565 49376523 ~ 49383368 (-) True AMCG00017169
AMCG00017175 mRNA upstream 33164 49404122 ~ 49447336 (-) True AMCG00017175
AMCG00017174 mRNA upstream 84536 49455494 ~ 49477304 (-) True AMCG00017174
AMCG00017178 mRNA upstream 116239 49487197 ~ 49493167 (-) False AMCG00017178
AMCG00017177 mRNA upstream 208631 49579589 ~ 49589402 (-) True AMCG00017177
TU23267 other downstream 875227 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 6504960 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 8152345 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 11310637 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 2059897 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 2074629 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 2074629 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 2485288 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 3487632 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile