RNA id: AMCG00017172


Basic Information

Item Value
RNA id AMCG00017172
length 1557
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00017172
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49404227 ~ 49415962 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCTGGGGCTGTTAAAGAGCATCCGCGTCGGGTTGCAGAAGGGAGCGGCTGGCTGCACCGCCCTGCACGGTGTCACTGCGTCGTGTCAGTGCCGCTCCGATGCCAAGCGCCCCCCGTCCCCCGGGCCCCAGCAGCACCACCGCAGCAGGGCCAAGAGGTCGGTGAGCATTGCGCCTGAGAAAGTGCACGACAAAACATACCTGTGGGCAAGATACCGAGAAATGAAAAAGCTTGTTTATGATCTTCTTCCACCTGGCGTGTGCAGCCTTCTCAATCCTGCCACCATCTATGCCAACAATGAGATCAGCTTGGGGGATGTGGAGATCTACGGCTTTGACTATGACTACACTTTGGCCCATTATTCGAGTTTTCTGCACACAATGATTTTTAACAAGGCCAGAGAAATCCTACTTGAGCAGTACAAGTATCCAAAAGGCATTAAGAGCTATGAATATATCCCCAGTTTTGCTATAAGAGGTCTCCACTATGATGTACAAAAAAGTCTTCTGATGAAGATCGATGCCTTCCACTATATTCAGTCCGGAACAGCATATAGAGGCCTTCAGCCCGTGTCAGACCAGGAGGTGATTGAGATGTATGGAGGGACTCAGCACATCCCACTGCACCAGATGAGTGATTTCTATGGGAAGGGTCCCATCGTTAAGCAATTCATGGATATATTTTCCCTCCCTGAGATGACCCTGCTGTCCTGTGTCAATGACTATTTCATCACCCACAACATTGAGTTTGATCCAGTTCACCTCTTCAAAGATGTCACGgatTCCATTAAGGATGTCCATGTGAAGGGAATGATGTACCAATGGATTGAGAAAGACATGGAGAAATACATCCTCAATGGAGATGAGACCTACGCTATCCTGAACAGGCTGGCAAACAGTGGGAAAAAACTCTTTCTCATTACCAACAGCCCCTTCAGTTTTGTTGACAAAGGCATGAAACACATGGTTGGGAAGCACTGGAGGGAACTGTTCGATGCTGGAAACTTGTACGATTTCCTGCAGTTGACTGGCTGGAGAGGACCCAAAGTGCTGTATTTTGGGGACCACTTGTACAGCGATCTCGCAGACCTTATGTTGCGTCACGGCTGGAGGACAGGGGCCATAGTGCCCGAGCTGCACACGGAGATCCGCATCATCAACACGGAGCAGTACATGCACTCCCTCACCTGGCTACAGGCCCTCACTGGCCTGCTGGAGAGGATGCAGGTGCACCATGATGCTGAATCAAAGATGGTCTTGAATGAATGGCTTAAGGAGCGACAGGAGCTGAGGTCTGTCACAAAGAACCTTTTCAACCCCCAGTTCGGGAGCATTTTCCGGAGCTACCACAACCCCACCTACTTCTCCCGACGGCTGTGCCGCTTCTCGGACCTGTACATGTCGTCGATCAGCTGTCTGCTCAACTACGACCTGCAGTATACCTTCTACCCCCGGCGCACCCCCCTGCAGCACGAGGCCCCGCTGTGGATGGACCAGCTGTGCACAGGCTGCATGAAGACACCGTTTCTGGAGGAAATGGTACACATCCGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23352 lncRNA upstream 22032 49380603 ~ 49382195 (+) False AMCG00017167
TU23309 lncRNA upstream 192971 49206808 ~ 49211256 (+) True G18791
TU23215 lncRNA upstream 1077422 48322263 ~ 48326805 (+) True G18722
TU23088 lncRNA upstream 1339209 48062399 ~ 48065018 (+) True G18607
TU23063 lncRNA upstream 1549569 47854392 ~ 47854658 (+) True G18582
TU23406 lncRNA downstream 20302 49436264 ~ 49493349 (+) True G18865
TU23467 lncRNA downstream 166302 49582264 ~ 49670289 (+) True G18908
TU23468 lncRNA downstream 257123 49673085 ~ 49673926 (+) True G18909
TU23626 lncRNA downstream 738396 50154358 ~ 50154694 (+) True G19040
TU23628 lncRNA downstream 739491 50155453 ~ 50155825 (+) True G19042
AMCG00017173 mRNA upstream 382 49402531 ~ 49403845 (+) True AMCG00017173
AMCG00017171 mRNA upstream 6315 49384611 ~ 49397912 (+) True AMCG00017171
AMCG00017167 mRNA upstream 22009 49372022 ~ 49382218 (+) True AMCG00017167
AMCG00017166 mRNA upstream 35388 49360827 ~ 49368839 (+) True AMCG00017166
AMCG00017162 mRNA upstream 125541 49265461 ~ 49278686 (+) True AMCG00017162
AMCG00017176 mRNA downstream 65263 49481225 ~ 49482420 (+) True AMCG00017176
AMCG00017181 mRNA downstream 262202 49678164 ~ 49697848 (+) True AMCG00017181
AMCG00017182 mRNA downstream 291573 49707535 ~ 49709079 (+) True AMCG00017182
AMCG00017183 mRNA downstream 297505 49713467 ~ 49727567 (+) True AMCG00017183
AMCG00017184 mRNA downstream 332881 49748843 ~ 49765192 (+) True AMCG00017184
TU23388 other upstream 593 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 4748129 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5272625 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7006440 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 10900595 38496051 ~ 38503632 (+) True G17193
TU23515 other downstream 297562 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 1135918 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 1143488 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 3398291 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 3405099 52821061 ~ 52834042 (+) True AMCG00017287

Expression Profile