RNA id: AMCG00017173


Basic Information

Item Value
RNA id AMCG00017173
length 1086
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00017173
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49402531 ~ 49403845 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTATAAATATCGTTTACCTAATCCAATGATATTATTGAtggtttttgtatgtttgttttttgtgtgcgaAATCTCGGCAATTAAACGAAGATGTAAAACGAACTTTAATGTTTAGTTAGCTGACCAAGTATGAGTTTATGAAAGCGATTGGATATGTTTGTCCGTATTGAGCTTCCGTAGCCGTCAAATATTTTCAGGAACACGTGTTCTTGAATAAGCATGTCGGCCTGAGTGTCAACACTGGTAGAGGACGTCCAAAGGGATACATAGACATGATAGAGTACATACAATTTTAAGTTGTGTATTCAGCTGAATTTATCTTCCAGTATAACAATGGGAGTACGTGCTCAATGAGATGCAtctgtgtagagcagtgttTATTCGTGTCCTTAATTTCCATCGATTCGGGAGGGAGATCTAGGTGAAACGCACAGTGTGACCATGCTCTTGGAAAGCCGAAAGATTAAATACATCCTCAGTCTGGTTCCTGGAAAGCGTCGCTTCGGGACGTACCGATTCCTGCCCTGTTTCTTCGTCTTGGGAGGCGTCATGGAGTGGATCATGATTAATGTGAGGATCGGCAAAGAAACCTTCTacgATGTCTATCGGAGGAAGCATTCAGAGAGGCGGCACCAGCAGAGGGTGGAGGAGGGTCTGGCTGTAGAGCAGGCGGGTGAATAACCTCGGGTGGCCCGCACTTCTCTGCCTTTAGCCGGGGGCGGCTCTGCGGTTATTTTCGGATCTGGTGACTCAACCCACGTGTGTTTGACTTGACGAGTCTGTGGCATATCAaacccaattaaccaattatcCCACGGCCTGTCTGATGTTACCTATTGTATtgtaaacatgtattaaatcaatgaaatatGAAACGTAAGTGTCTAGTGTATGTATTGATTGAAAAAGATGTATAGTACAATACGTATTATATCTGCTTTTGACACATGTctaatttgtattgaaaaaagtTTCATTAAGAATCGACCAGTTCCaacatctttaaaacatttaaaacagctgATTTGAGTTTTATGATCCAAAGATTGTGAACATcgtaataattgttttattaatacttttCTA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0070925 organelle assembly biological_process
GO:0061061 muscle structure development biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23352 lncRNA upstream 20336 49380603 ~ 49382195 (+) False AMCG00017167
TU23309 lncRNA upstream 191275 49206808 ~ 49211256 (+) True G18791
TU23215 lncRNA upstream 1075726 48322263 ~ 48326805 (+) True G18722
TU23088 lncRNA upstream 1337513 48062399 ~ 48065018 (+) True G18607
TU23063 lncRNA upstream 1547873 47854392 ~ 47854658 (+) True G18582
TU23406 lncRNA downstream 32419 49436264 ~ 49493349 (+) True G18865
TU23467 lncRNA downstream 178419 49582264 ~ 49670289 (+) True G18908
TU23468 lncRNA downstream 269240 49673085 ~ 49673926 (+) True G18909
TU23626 lncRNA downstream 750513 50154358 ~ 50154694 (+) True G19040
TU23628 lncRNA downstream 751608 50155453 ~ 50155825 (+) True G19042
AMCG00017171 mRNA upstream 4619 49384611 ~ 49397912 (+) True AMCG00017171
AMCG00017167 mRNA upstream 20313 49372022 ~ 49382218 (+) True AMCG00017167
AMCG00017166 mRNA upstream 33692 49360827 ~ 49368839 (+) True AMCG00017166
AMCG00017162 mRNA upstream 123845 49265461 ~ 49278686 (+) True AMCG00017162
AMCG00017164 mRNA upstream 149844 49237902 ~ 49252687 (+) True AMCG00017164
AMCG00017172 mRNA downstream 382 49404227 ~ 49415962 (+) True AMCG00017172
AMCG00017176 mRNA downstream 77380 49481225 ~ 49482420 (+) True AMCG00017176
AMCG00017181 mRNA downstream 274319 49678164 ~ 49697848 (+) True AMCG00017181
AMCG00017182 mRNA downstream 303690 49707535 ~ 49709079 (+) True AMCG00017182
AMCG00017183 mRNA downstream 309622 49713467 ~ 49727567 (+) True AMCG00017183
TU22550 other upstream 4746433 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5270929 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7004744 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 10898899 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 15301668 34100315 ~ 34100863 (+) True G16550
TU23515 other downstream 309679 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 1148035 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 1155605 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 3410408 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 3417216 52821061 ~ 52834042 (+) True AMCG00017287

Expression Profile