RNA id: AMCG00017181


Basic Information

Item Value
RNA id AMCG00017181
length 2020
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00017181
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49678164 ~ 49697848 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTACTAGATGAGGAATTTCAAAGCCTGTGTCCAGGGGAGAAGCCCCTTTAACAGGCAGGCAGGGCGGGGACGTGTCTCATATTACCTCGATCCCCAGACCTCCGGTGGAACAGAGCGATTGCTCCTCAAATCAGCCATGGCGACAATTGCaagggtttttattttcttcttaattgGAATTTACACTGCAGTCGATTCTTTCGATTGTGTGTCATACCGTGACTACTACGGAAAGAGCATGGGGTCTTCTTTTAGCATCGCTATTAGTATAATCCCCATCTTTGTcttaatcatcatcatcgtctCTTGCTGCACGTGTCCCTGCTGCTGCCTGTacaaaatgtgcagaaaacCTCAAAGACCGATCGTTACCAGCACAACGACCACCACAGTGATGCAGGTCCCGTACCCACAGCAGCCCGTGGGTCCTCAGTCCTACCAAGGAGCGCAGTATCCAGGATACCAGCCAGTGCCAGTCCAGCCGGGATATGGAGGCCAGCCCATGCCAACAGCACCCTACCTGGGACAGCAGTACGCCCCCACCTACCCAGGGCAGGCATTAGGGCCACCCCCTTCCTACCAAGAGGTAGTGCCGGGTGGTACCGGGGCTCCTGCCTATCCACCCGGCCCGCCCTCCTACAACCCGGCCCACCCTCCCGCAACAGCGGCCTACACCTCCGGACAGCCTGCTTACCCCATGCAGCCTCCCCCGCAGCCCGGCTACCCCCCCCAGCAGGGCTACCCCCACCAGCCTGACAGCAGCTCCGCCCAGCCCGCCTACAACCCTGCATATGTGGAGCCACTAAAGTCAGGATACTGAAGGGGACGTTACAATTGTaaccaacaaacacattaacGCTCTGCGACAGCTTTGCCTGTCACCGCTGGAATACACTGGCACAAACAATGACTGTTAAACGGGGATGTCCTGGGCAGGTTTTATTAACGTGGTCTTGTCTTCACAAGGTTTTTCTTAAGGTTCTATCTTCTTTAAAAGAATGTCTCtactatatttaaatactttttgcttattgtttatttttgtttttgattaaagttttcacattttccactgTAGCATGTTTCAGTTAATATTTCTATAGTAGATATATAAAATCTCATTATAATACTAGAAAGGCGTACATTCCACATGTTTCCAATTAAACTGTTAGTGCAGTCTAATCATTAGGGTCGAATACCTGGAAGTGCAACTCTTGGGAATATTTCACGTTCAAGTCTCAAAGACACTGTTAATAAAAGTCCTCagaaaatagtgttttttttttttaatgcattatgaCCAATGCAAAGTATCAGGGGTTGGCTTTCACTGAAAGTCCAATTAAACatgtgaaaagagaaaatgtctTACAAGCCGGTGCTACGTCGCTTAATTTCATAGTATATTTGTTGTGCCGTTCGCATGTCTGTCAGTTGCCAGTACTACCTACTGGACAATAACTGAACTGCAGAGCTTGTGTATAAAGTTCCAATATGCCTTTTACAGGaatgtttctccttttttctgtCGACTCTCAGGTTTTTTTGcaataaactgaataaataaatgctaaattcGTGGTTTTATACTTTACCTTTTAGgttcttgttattttaataaaaataaataggattTGCCTTGTCGTTCATATCAGTGACGTACCAAACCTTCAGGGAACATCAACCAAAAACacctttaacaaataaaaaccacaTCCATGGTGTATGTAGCAGATCCACAATGTGCCATGAAAGATAGATTTCAGTCTTTCCATGCAGTGGCTTCTAGTTCGGtttgttatgttacagtcaCTACTTTATCATGTATGGTCAAGTTTTAGAGATGCCTTAAAAATATAGAGGTTGTTTCCCACCCCCCTCTAATGTCCTTTTTCCTGATCCCATACAATAGACTGTTCAGTACAAAGTGTCACTTTTACTTTTAGAAAGCGAATTTAACACGATCgtccttttcctgtttttaataacctgtgtttaaattgtatttagaCATGAAAC

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0016477 cell migration biological_process
GO:0009605 response to external stimulus biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0070887 cellular response to chemical stimulus biological_process
GO:0040011 locomotion biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0042330 taxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04611 Platelet activation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23468 lncRNA upstream 4238 49673085 ~ 49673926 (+) True G18909
TU23467 lncRNA upstream 7875 49582264 ~ 49670289 (+) True G18908
TU23406 lncRNA upstream 184815 49436264 ~ 49493349 (+) True G18865
TU23352 lncRNA upstream 295969 49380603 ~ 49382195 (+) False AMCG00017167
TU23309 lncRNA upstream 466908 49206808 ~ 49211256 (+) True G18791
TU23626 lncRNA downstream 456510 50154358 ~ 50154694 (+) True G19040
TU23628 lncRNA downstream 457605 50155453 ~ 50155825 (+) True G19042
TU23647 lncRNA downstream 634618 50332466 ~ 50333366 (+) True G19058
TU23648 lncRNA downstream 635912 50333760 ~ 50334506 (+) True G19059
TU23650 lncRNA downstream 643569 50341417 ~ 50342150 (+) True G19061
AMCG00017176 mRNA upstream 195744 49481225 ~ 49482420 (+) True AMCG00017176
AMCG00017172 mRNA upstream 262202 49404227 ~ 49415962 (+) True AMCG00017172
AMCG00017173 mRNA upstream 274319 49402531 ~ 49403845 (+) True AMCG00017173
AMCG00017171 mRNA upstream 280252 49384611 ~ 49397912 (+) True AMCG00017171
AMCG00017167 mRNA upstream 295946 49372022 ~ 49382218 (+) True AMCG00017167
AMCG00017182 mRNA downstream 9687 49707535 ~ 49709079 (+) True AMCG00017182
AMCG00017183 mRNA downstream 15619 49713467 ~ 49727567 (+) True AMCG00017183
AMCG00017184 mRNA downstream 50995 49748843 ~ 49765192 (+) True AMCG00017184
AMCG00017185 mRNA downstream 71112 49768960 ~ 49780898 (+) True AMCG00017185
AMCG00017188 mRNA downstream 93031 49790879 ~ 49796155 (+) True AMCG00017188
TU23388 other upstream 274530 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5022066 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5546562 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7280377 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 11174532 38496051 ~ 38503632 (+) True G17193
TU23515 other downstream 15676 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 854032 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 861602 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 3116405 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 3123213 52821061 ~ 52834042 (+) True AMCG00017287

Expression Profile