RNA id: AMCG00017183


Basic Information

Item Value
RNA id AMCG00017183
length 1709
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00017183
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49713467 ~ 49727567 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATATCCGGGAGCAAAGCGGTAGTGCTACCAGTAGAGAGTTGtcggtgtgtgtcagtgaaagAAATCATTTTGCGTCCATCTGTGTGTCTATGGTGTGCCGCAATTGTTTTGCGAAAGAACTTGAATTGCGATTCCTGTACGTTTTCCGGCAGCATCTGTGGCATGGAAGTAGATAAAATGGACGAGAACGAGTGGAAATATCACGGGGAGGGAAACAAGAGCCTAGTGGTGTCTCATGTCCAGcactCTCAGGTTCTAAGGTTTTTGAAGTACCCAGCAGAAGAAACCGAAAACCCGAATCAGacatcaGAAGAAGCTTTTCATCACATACTGAACATTGTGGACttcagtaaaaatgtaatgaagcCATTCCTTGGAGGAAAATATGTTCACCATGGAgaGGCTGTGAAACTACCTTTGGACTTTGTAAGACAGCTTTCTTTAAAGGTTCAGCAAGAAAGACCAGAATCCCGTTGTGACAAGGTAATGGACACTTTTAGTGGATATGCTTTGTGCCTGCCAAATCTAACCCAGCTCCCAGACTGCCATTTCAGTGAACACAGGCCACCACTTTGCATTGAGATAAAGCCCAAATGTGGATTTCTGCCATTTTCAAGGCACGTCACTAAAGAAGTGAAGCGCAAGGTGTGCCGCTTCTGTATGCATCAACACTTGAAGCTAGCCAATGGAAAATGGAAGAGGATGAGCAAGTACTGTCCTCTTGATCTATTCTCAGGgaaCAAGCAGAGAATGTATCTTGCAATAAAACACTTGCTGGAAGAGGCACAGAACAACTTAAAAATCTTTAAGAACGGTGAACCAATATACAGCTGTAAGGATGACAAAGACTGCCTTCAGGACTTGAATGAATTGGCTCAGCACTTGAAACCCTATTTCTTTCCTGCCAATGGTTTAATCAACGGCCATCAGTCCACAAAGGTGGTCATCAATGAACTGATCCAGGTGATCACCACAGTGCTGCTGAGCAGCTCAGACTCCTGCAGGACAGGGGACCTGAGGAAGGTGCTTTCCCCCGAGGGCCGGGGCCACTGCGAGGCCAGCCTACTGCATAGAGACGTGCTGCGCAAAGGTATTCCCTGCCTGCCCAAAGACTGCGTTCTCTCTAAAATACTACACGCTCAGATGCAGGACAGCCTAGACATCGAGGGACTCTATCCTCTGTACAAGCGGGTGGAGCAATACCTGGAGGAATTCCCCAAGGAGAGGAGCAGATTACAGATAGATGGGCCATACAACGAAAGTTTCCTCGAAAAACTGCGAAACTGTCCCTCTGAAGATGATGGGACGGTGGAATATGCTGTTGGCAAGGTCCACCAGTACAGAGTAGCGATGACGGCCAAAGACTGTTCGATAATGATTGCGCTCGCCCCGTGTGCGGACGACGAACCACTCGAGAACAGCGTGGAGATTCAACCGTCGAAGTCCAGGTTTATGTATTCAGTGTCCATCCTGGATCTGGACCCTAAACCCTACGAGAACATCCCCCATCAGTACAAGCTCGACACGAAAATAGTCAATTACTATCTCCGGAGCACACAGGCCAAACAGGACCCCGCCAGCGCCGGCCTCTTCCGGGACAGCGAGGACTGCACGCTGCTGTTCCACCCCGTGTGAACTCTGCAGGGGGCCGCGCGTTCTCTTGAAGCATTACATGAAGCCGGTTTATGGATGCCAGcaaggattttg

Function

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0016310 phosphorylation biological_process
GO:0005813 centrosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0035299 inositol pentakisphosphate 2-kinase activity molecular_function

KEGG:

id description
K10572 IPPK; inositol-pentakisphosphate 2-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23468 lncRNA upstream 39541 49673085 ~ 49673926 (+) True G18909
TU23467 lncRNA upstream 43178 49582264 ~ 49670289 (+) True G18908
TU23406 lncRNA upstream 220118 49436264 ~ 49493349 (+) True G18865
TU23352 lncRNA upstream 331272 49380603 ~ 49382195 (+) False AMCG00017167
TU23309 lncRNA upstream 502211 49206808 ~ 49211256 (+) True G18791
TU23626 lncRNA downstream 426791 50154358 ~ 50154694 (+) True G19040
TU23628 lncRNA downstream 427886 50155453 ~ 50155825 (+) True G19042
TU23647 lncRNA downstream 604899 50332466 ~ 50333366 (+) True G19058
TU23648 lncRNA downstream 606193 50333760 ~ 50334506 (+) True G19059
TU23650 lncRNA downstream 613850 50341417 ~ 50342150 (+) True G19061
AMCG00017182 mRNA upstream 4388 49707535 ~ 49709079 (+) True AMCG00017182
AMCG00017181 mRNA upstream 15619 49678164 ~ 49697848 (+) True AMCG00017181
AMCG00017176 mRNA upstream 231047 49481225 ~ 49482420 (+) True AMCG00017176
AMCG00017172 mRNA upstream 297505 49404227 ~ 49415962 (+) True AMCG00017172
AMCG00017173 mRNA upstream 309622 49402531 ~ 49403845 (+) True AMCG00017173
AMCG00017184 mRNA downstream 21276 49748843 ~ 49765192 (+) True AMCG00017184
AMCG00017185 mRNA downstream 41393 49768960 ~ 49780898 (+) True AMCG00017185
AMCG00017188 mRNA downstream 63312 49790879 ~ 49796155 (+) True AMCG00017188
AMCG00017189 mRNA downstream 78260 49805827 ~ 49811967 (+) True AMCG00017189
AMCG00017190 mRNA downstream 94166 49821733 ~ 49831079 (+) True AMCG00017190
TU23388 other upstream 309833 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5057369 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5581865 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7315680 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 11209835 38496051 ~ 38503632 (+) True G17193
TU23710 other downstream 824313 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 831883 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 3086686 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 3093494 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 3608342 53335909 ~ 53339655 (+) True G19683

Expression Profile