RNA id: TU23515



Basic Information


Item Value
RNA id TU23515
length 429
RNA type TUCP
GC content 0.42
exon number 3
gene id AMCG00017183
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49713467 ~ 49727567 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgaaagAAATCATTTTGCGTCCATCTGTGTGTCTATGGTGTGCCGCAATTGTTTTGCGAAAGAACTTGAATTGCGATTCCTGTACGTTTTCCGGCAGCATCTGTGGCATGGAAGTAGATAAAATGGACGAGAACGAGTGGAAATATCACGGGGAGGGAAACAAGAGCCTAGTGGTGTCTCATGTCCAGcactCTCAGGTTCTAAGGTTTTTGAAGTACCCAGCAGAAGAAACCGAAAACCCGAATCAGacatcaGAAGAAGCTTTTCATCACATACTGAACATTGTGGACttcagtaaaaatgtaatgaagcCATTCCTTGGAGGAAAATATGTTCACCATGGAGTAAGACTTTTGTTACATATCTCTGGCATGTTACTCCTTTTGTTGACCGTGAAGTTTTGAAGAACAAAACCACAATGTGATGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23468 lncRNA upstream 39598 49673085 ~ 49673926 (+) True G18909
TU23467 lncRNA upstream 43235 49582264 ~ 49670289 (+) True G18908
TU23406 lncRNA upstream 220175 49436264 ~ 49493349 (+) True G18865
TU23352 lncRNA upstream 331329 49380603 ~ 49382195 (+) False AMCG00017167
TU23309 lncRNA upstream 502268 49206808 ~ 49211256 (+) True G18791
TU23626 lncRNA downstream 432887 50154358 ~ 50154694 (+) True G19040
TU23628 lncRNA downstream 433982 50155453 ~ 50155825 (+) True G19042
TU23647 lncRNA downstream 610995 50332466 ~ 50333366 (+) True G19058
TU23648 lncRNA downstream 612289 50333760 ~ 50334506 (+) True G19059
TU23650 lncRNA downstream 619946 50341417 ~ 50342150 (+) True G19061
AMCG00017182 mRNA upstream 4445 49707535 ~ 49709079 (+) True AMCG00017182
AMCG00017181 mRNA upstream 15676 49678164 ~ 49697848 (+) True AMCG00017181
AMCG00017176 mRNA upstream 231104 49481225 ~ 49482420 (+) True AMCG00017176
AMCG00017172 mRNA upstream 297562 49404227 ~ 49415962 (+) True AMCG00017172
AMCG00017173 mRNA upstream 309679 49402531 ~ 49403845 (+) True AMCG00017173
AMCG00017184 mRNA downstream 27372 49748843 ~ 49765192 (+) True AMCG00017184
AMCG00017185 mRNA downstream 47489 49768960 ~ 49780898 (+) True AMCG00017185
AMCG00017188 mRNA downstream 69408 49790879 ~ 49796155 (+) True AMCG00017188
AMCG00017189 mRNA downstream 84356 49805827 ~ 49811967 (+) True AMCG00017189
AMCG00017190 mRNA downstream 100262 49821733 ~ 49831079 (+) True AMCG00017190
TU23388 other upstream 309890 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5057426 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5581922 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7315737 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 11209892 38496051 ~ 38503632 (+) True G17193
TU23710 other downstream 830409 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 837979 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 3092782 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 3099590 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 3614438 53335909 ~ 53339655 (+) True G19683

Expression Profile