RNA id: AMCG00017184


Basic Information

Item Value
RNA id AMCG00017184
length 4195
RNA type mRNA
GC content 0.43
exon number 10
gene id AMCG00017184
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49748843 ~ 49765192 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAGCAGAGTAGACGTGCACTGTTGTCAAGCCCCTGGCAATCCCAGCAAACTTGGGGAGAGCGGAAATATTTGGCCTTGCAAACTGACTGCGAACCGCTGTGCTTGCAAGCTCTACAGAACATCGTCTCCGCTATGGATCCCCGGGTGATCCTTGCACTAATGCTGCTCATCGGCCTCGGCCTCACTCTGGCACACGATGGAAGAGGCCCCGCTGCGaagggaaagaagaaaagatcaGGACCAAAGAGAGGGAAACCCAGACAACTGAGGCAAAGGTCCTCCGACGCACTCGTCCGCCTCGGCAATGTCCCCGTCAGCCATGGAGACGACAGTGGGCCGATAATCATCCAGTCCTACAAAGGTGTGGATGAGTTTGAGTCGAACTACCACGTCCTACCAGGAAAGCATGGACAGTGCGTATACCATGGCATCACCATGTTCGATAAAGCGGTTTGGTCTCCCAAGCCCTGTATCACCTGCCTTTGCGCTAATGGGAATATTGCCTGTGATGAAATGAAGTGCCCCACTCTGTCGTGCCCGCTCAGTGTAAAGCCCCCAGGAGAATGCTGCCCCGTCTGCACAGATATCGAACCCAATGACCCAAGTGAACTGGGGCCCGGGCCGCCCCGCTCACAGGCCGAGATCGAGGAGCTGCtgaagaaggaggaagaggatcagcaggaggaagaagagagacTGCGGAAGAAGGATGAGGAGcgcaagaggaggaggaagcacAAGAAGCTGGAGGAGGAGCGGCAGAGACAGCTCATGGAGGAGCGCCGGCGCAAGGAAGAGGAGCTCCAGGAGAggatggaggaggaagaggaaaagcAGAGGGAGAAGCAGGAGGAAGAGCAAAAGCGACTGAGGGATGAACAGAAGaagcaggaggaggagcagaagaGACGAGAGGAAGAACAGGAGCGGCGCCGGGAAGAAGTCGCCGCTGCAGCGGAGGAGGACAAGAAGCGGCGGCTGCAGGAGGAGGGAAAGCAGGAGGAGGGCTGGTGgagccgagagagagagcgggagcgGGAGCTGGAGAGGACATGGGAAGAAGAGAcagaggaggagctggaggtggATGAAGATGAGCTGGAGGAGGAAGATTGGTTAAGAGGCGATGTCTTCCGAGTGCCACCCCAGCCCACCACGGCCGAGGGAAttacccccctccctcctccgtcTCCTGAAGGTCCTGTCCGCACCCTGCCAGCAGGCTGCGTCATCTCCGATGTCACACTGAGCTGCACCAACGCCAAGCTCACAAATATCCCCCCCCTGTCAGATCCAGAACTCAAAAGCCTGAGTCTTGAAGGGAATTTTATAACTACAATTCCAGCAGAAGCCTTCAATGGAATTCCTAACTTGGAGTGGATTGACcttggcaaaaacaaaatcacatccGCAGGCATAGATCCACAAGCATTTAAAATCCTAAAGCAGCTAACACGTCTCTATATGGATGGAAACCTTCTTGAGCAAATCCCTGCAGATCTTCCCCCCACTTTGGAAGAACTGAAAATCAATGAGAACAACCTGAAAGGCATCGAGGAAGAGAGTTTTCAAGATCTGAGCAATCTCATCACCCTCGAGCTGGAAGGAAATATGCTTAGTGAAGGGAATGTCAATCCCTTGGCCTTCAAACCACTAAAACAACTCTCCTACTTGAGGCTGGGTAGAAACTATTTCCGCACTATTCCTCAGGGGCTTCCTGCATCTATTGAGgaactttacattgaaaacaatgtcaTAGAAGAAATTTCGGAAACGGCATTCAATCATACCAGAAACCTAAACGTTATTGTGCTGAGACACAATAAAATAGATGAGTCCAGGATAGCCCCCCTGGCCTGGATTAACCATGAGAACCTGGAATCCATAGATCTCTCCCACAACAGGCTCTATCATGTGCCTTCATTTCTCCCCAAATCTCTGATCCACCTGGTCCTACTGGGAAATCAGATTGAGCGAATCCCTGGATATGTGTTTGCCCACATGGAGCCCGGCCTCGAGTACCTGTATCTCTCCTTCAACAAGCTGGACAGCGAAGGGATCGACCCAGTGTCCTTCTTTGGGGCCTACGACTCCCTGATAGAACTGTTTCTGGATCACAACCAGATGACCACGGTGCCCTGCGGGATCAACGAGATGAAATCGCTGCATTTCCTGAGACTGAATGACAACAAAATAAGGAATTTTGGCCTAGATGCTTTCTGTGATCCTGCAAACGATGAAGACTCAAATCTAGTCACACTGCGCCTGGAAAATAACTACATCGACAGCAGAAAAATTTCACCTATTGCCTTTACTTGTATCAGGTCTTATTCTAGTGTTGTTTTGAAGCCACAGAAGATTAAGTAGCATATTTGTCATGTTATGATTGTGTGGTccaaagaaagcaaaagaagCTCTACTGACTTACCAGACAACCACAACAACGACCACtgagagaaaacacacagagatcaGTTAATTCCACTTATACCTCTCCTTGCTTTCTGGAGAAAAAGTAGTCTTTGTAATCTGTTGTtccttttataataatttatttggagATATTTTCAGTGACATTTAATACAGTCAGCATGAAAAGGAAAGAAGGCTTTATATTTAAAGATGGATATTAAAATGGCTGTAGGTCATtaccattttttgttgttgggtCCTTTTAAAACCAATTACTGACAGATTTCTGACAGATTAGCTAAACATTTGTAAAGCCATAATGGACCAACTAGACTGAAAAAGTGgttcagaagaaacaaaatagataacagaattatttaaatttctAATTGTAGTCGGGAGTTTCAAGGTTCAACAGCGAGTCTAAATGGTCTGGATTTGGAATTAAAAGCATGCcgtaatatttatttatcaattctgaaacaaaattgAGAAACCAAATAATTAATAGACGTGTTTGgtcataagtaaataaatgtaaaaaaaacaactaaaaaaagtgccttgagagaaaaacacacacaatcatctCAATATTTACCCAGTTCTCAGCATTGCTTAATCGAATGACCAAATCATTATCTAATCTTCCtcttcaatatattttgttttacaacagtggaataataatgaaaagaaaacatctaaaAGGACTGATTAATGAATCATTTATTGATTAATGGTCATTTTAATAGGAAGGTGAAAGATTTTCCACAGCTACTAAaaacaggaataaataaataaatgaaactattAAGAGGCTGTGTGAAAATTGAAAGGTCCAGACCTCACTccacaaaacaacatcaaacgCATATCTGACCACAGTAAACCACAATTTATCTGGAAACTATTGccatacatttgtattcacattttgttttttaaacaaaatcaagacaCATGCATGTACCATCCTTACCCTTTAATAagaaagtattacaattttgtcaTGGTGCTATACTGCTACTTCCTGACAGCTGTGTCTTGAGATTACATTTGCGACATGTAAGGTGCACCAAGAAATAGTTGAGCAGAAAGTGGTCTCAGAGTACGAAGCTCTGTTGCCTGGGTTGGATTTTGTAGTTCAAGTTCGAtgcaagttttattttgtattaagttATTTATCAGGCATCTTTATTCAAGGTGACTTACACAGTTTAACATGCAATTACAGTCCAGTCATCTGGTCTCAACCCTACACAGAGTTGAAAGTAAACTGTAAGGCACAACACAAAGCAAATAACTAACAATAATTATACAAGGGTAGTGAGGCAGCATGAGATATCACCAGGAGCTACAGAAATAACACTAAAACTGCccaattaatgtaatattaaaaagaaagaaaacaaaaaatgtaccgTTTTTCCATCAGAATTGACAGAATTTATGTCCTTTAACCATAAATCGAGGATGAAACTATTTCTTTAAACAATATTGATCTTAATTACAAATCATgaacatttctaaaaaatattaatacaattattactagcattactattactattaatgtcagtgtatgtttttattggtACAGCCTGTTGTATTCTCTTATCAGTAATATGTATACTTACTAtacttctgtgtttgtgtgtataatttgtaCCACCTGTGCTTTGCTGGCCCAGATGTAAATGGAGGGGAGGGTGTGTTTTAacacaagtcttttttttttaataatttgcacattttcaaaaatatattttaaaaaata

Function

GO: NA

KEGG:

id description
K08119 ECM2; extracellular matrix protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23468 lncRNA upstream 74917 49673085 ~ 49673926 (+) True G18909
TU23467 lncRNA upstream 78554 49582264 ~ 49670289 (+) True G18908
TU23406 lncRNA upstream 255494 49436264 ~ 49493349 (+) True G18865
TU23352 lncRNA upstream 366648 49380603 ~ 49382195 (+) False AMCG00017167
TU23309 lncRNA upstream 537587 49206808 ~ 49211256 (+) True G18791
TU23626 lncRNA downstream 389166 50154358 ~ 50154694 (+) True G19040
TU23628 lncRNA downstream 390261 50155453 ~ 50155825 (+) True G19042
TU23647 lncRNA downstream 567274 50332466 ~ 50333366 (+) True G19058
TU23648 lncRNA downstream 568568 50333760 ~ 50334506 (+) True G19059
TU23650 lncRNA downstream 576225 50341417 ~ 50342150 (+) True G19061
AMCG00017183 mRNA upstream 21276 49713467 ~ 49727567 (+) True AMCG00017183
AMCG00017182 mRNA upstream 39764 49707535 ~ 49709079 (+) True AMCG00017182
AMCG00017181 mRNA upstream 50995 49678164 ~ 49697848 (+) True AMCG00017181
AMCG00017176 mRNA upstream 266423 49481225 ~ 49482420 (+) True AMCG00017176
AMCG00017172 mRNA upstream 332881 49404227 ~ 49415962 (+) True AMCG00017172
AMCG00017185 mRNA downstream 3768 49768960 ~ 49780898 (+) True AMCG00017185
AMCG00017188 mRNA downstream 25687 49790879 ~ 49796155 (+) True AMCG00017188
AMCG00017189 mRNA downstream 40635 49805827 ~ 49811967 (+) True AMCG00017189
AMCG00017190 mRNA downstream 56541 49821733 ~ 49831079 (+) True AMCG00017190
AMCG00017192 mRNA downstream 86106 49851298 ~ 49905581 (+) True AMCG00017192
TU23515 other upstream 27372 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 345209 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5092745 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5617241 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7351056 42391297 ~ 42397787 (+) True G17697
TU23710 other downstream 786688 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 794258 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 3049061 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 3055869 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 3570717 53335909 ~ 53339655 (+) True G19683

Expression Profile