RNA id: AMCG00017185


Basic Information

Item Value
RNA id AMCG00017185
length 2842
RNA type mRNA
GC content 0.38
exon number 8
gene id AMCG00017185
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49768960 ~ 49780898 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtGGAGCAAGGTAGGGGTCGGTGACGGCTGTTCGAGAGACCTACGCTTCACCATGAGGGAGAttctcctgctctccctcttGGCACTGTGCTCTGCCAAATACATCCAACCATTGAAGTTCTTGGACCTGCTGAAGATGCATGACATCATGATGCAGGACGAAGGAGAGGATGATGATGACAACAACTTCCTGTTTCCCACCAGGAAGACCAGAGCAGTGACTCCCTCAGGATTCCCCTACTCTACCTGCCCCTTCGGCTGCCAGTGCACGCTCAGGGTGGTGCAGTGCTCAGATCTAGGTTTGACATCAGTGCCAAAAGACATCCCTACTGATACATTAATGATTGAcctccaaaacaacaaaatcactgAGATCAAGGAGAATGACTTCAAGGGCATGAATAAATTATACGCACTGTTTCTGATTAATAACAAGATATCCAAGGTCCATCCCAAGGCGTTCCGCAGCATGACCAAACTGCAGCTCCTCTACCTCTCGCACAACCTGCTGACGCAAATCCCGGACAACATGCCAAAAAACGTCCTGGAGCTGAGGATCCATGATAACAAGATAAGGAAAGTCCAAAAGGAGGCTTTCAAAGGGATGAGATCCTTGCACGTTCTAGAAATGAGTGCAAACCCTATCGAAAACAAAGGCATTGAACTTGGGGCTTTCGAAGGCATGTCTGTCCTGTTTTTACGAATTGCAGAAGCAAGACTCACGGCCGTTCCTAAAGATCTCCCCTCTTCATTATATGAGCTTCACTTGGATTACAACAAGATTGGGAAAGTGGAAGTGGAAGATTTTATAcgatacagaaatgtgcagagGCTGGGGCTTggatataatcaaattaaaacagtggAGAATGGAAGTTTAGCTAATCTTCCTAATATCAGAGAACTGCACTTGGACAACAACAAACTCAGAAAGGTGGTGTATCTTCACGCCAACAATATCTCAAGTGTGGGCGTCAATGACTTCTGTCCCACGCGAACCAACGTGAAGAAGATCCCCTATTCTGGTATAAGCCTGTTTGCGAACGCTGTGAAATACTGGGAGGTGCAGCCGGCCACTTTCCGCTGTGTGTCCAACCGGATGGGAGTTCAGCTGGGCAACTTCAGGAGGAGGAAGTGAAAGCCTGCTGGCTCGAATGTCTAAAATGTTAAAGGTGGAATAGAGCATTGAAACTGAGGAGGAGGCATTACTTGAAATTATAGTTAGttaatcaataattaaacaaagacaTGAAAAAATCAGCAGGTGCTACAAGTTTAAATCTGCAGTGCAGACAGTGTTTAAAGAACAATAATGATATACCTGTTTAAGGAATACGTGGATGCCTTTCATTTTGACACCCACATTGTTCAATGCCAAAAGCATTCTTTGTAATGTAAAAGGTATCAGAcaatggcatttatttttacatccaGCTGTTTCAAGAGTAAATTATACATAgtctaagaaatcaaaatataatcCTCTTTGTAGTGGAAACATTATTTCCCTTTATTCATCAAAGCACTTTGGACCTAAAAACAAATGAGACGCTGGACAAACTTTAGATTTTGAATGTCCTATTGGCTAGACATTTCTTTTCTATGTACGTATGGCCACTTTGTAGCATTCTcattcaatttctttttttatttttctacaacaataatataaaatggtgGCCTAAACATGGGATTTCCATGGTCTGTATGTACTAGTCTATACTAGGATtgattagaaatgttatttaactttaaacagTGACTCATATGTGGTTAAAATGATGAAGAATAAGAACAAACTTTTTGAAGCTAAACTTTAACTTTGAAACTGTTGTCTGAAGCTGAATAATTCCAGCTTCTACTGTAGCCTTTTATAATTTCTCTTGTTGGTTAAACAGAGACGAACTCAAACCCAAAATGGCACACTTTATTACATGAAATTCCCAGGTGGAAAGGATACAGAGGTGTGggtttacacacacaaacacactactATTAAGACCTTATAGAATCAATGCACTTGATGCTGGTTCTTAACATATTTCACTCAGTTTCAAGAACAAAAATCCACTCTTTCAGTATAAATCCAAAAGCAATTCCACAGCCCTCCCTGTTGgtgaggatttaaaaaatacataaaataaattatgaactTTTTCTCCGACCACAAAGTGTACAGATTATGACCTAATCTATATACCAGAGGAAATAATCcagcaattgttatttttaaggcTCTTATTCttgaacattaaaataactgaacatttaCGTACAGACAGTAGTACTTCTCTGTAacgttttaaattattaatgttttaaaagttagATGCTTTCCTTGCAAATCACGTTTCCATCATAAATTTATTAATACACTTATTTAACATAATTCTGTATTTCAGTCCCACAAACACTAGAACAATGAACTGCTgagtttaacaaaaaaacaaacttaactTGACAGAGTTGACAGAAGTCTTTGCCACCACTATCACAAGACTTATAATTTTAAGTAGCcgagttttgttttaaaggagaattttcattttgcatgctTAAGTTATATAACATGTACCTAAGGATTTTCTGTTCCCCTTTAGTTTTATAAGCTTTGGTTTATGGTGCTTGATTTTGAGCTGATTACATcaaggaaatgttttgaagtaccctattattttaacattttccactGTATGTATCACATACTGAAAAAGATGACTGTATATTTACTATTCAGTTCGAATAAACAGTACAGTTTACAAGTCACAGTTTTTCTGCTgattttatacaggtaatggaAAACTGGAACAAATGAACTGAAGTCTGTAGGTAAAAATCAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0005518 collagen binding molecular_function

KEGG:

id description
K08120 ASPN; asporin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23468 lncRNA upstream 95034 49673085 ~ 49673926 (+) True G18909
TU23467 lncRNA upstream 98671 49582264 ~ 49670289 (+) True G18908
TU23406 lncRNA upstream 275611 49436264 ~ 49493349 (+) True G18865
TU23352 lncRNA upstream 386765 49380603 ~ 49382195 (+) False AMCG00017167
TU23309 lncRNA upstream 557704 49206808 ~ 49211256 (+) True G18791
TU23626 lncRNA downstream 373460 50154358 ~ 50154694 (+) True G19040
TU23628 lncRNA downstream 374555 50155453 ~ 50155825 (+) True G19042
TU23647 lncRNA downstream 551568 50332466 ~ 50333366 (+) True G19058
TU23648 lncRNA downstream 552862 50333760 ~ 50334506 (+) True G19059
TU23650 lncRNA downstream 560519 50341417 ~ 50342150 (+) True G19061
AMCG00017184 mRNA upstream 3768 49748843 ~ 49765192 (+) True AMCG00017184
AMCG00017183 mRNA upstream 41393 49713467 ~ 49727567 (+) True AMCG00017183
AMCG00017182 mRNA upstream 59881 49707535 ~ 49709079 (+) True AMCG00017182
AMCG00017181 mRNA upstream 71112 49678164 ~ 49697848 (+) True AMCG00017181
AMCG00017176 mRNA upstream 286540 49481225 ~ 49482420 (+) True AMCG00017176
AMCG00017188 mRNA downstream 9981 49790879 ~ 49796155 (+) True AMCG00017188
AMCG00017189 mRNA downstream 24929 49805827 ~ 49811967 (+) True AMCG00017189
AMCG00017190 mRNA downstream 40835 49821733 ~ 49831079 (+) True AMCG00017190
AMCG00017192 mRNA downstream 70400 49851298 ~ 49905581 (+) True AMCG00017192
AMCG00017195 mRNA downstream 212464 49993362 ~ 49997451 (+) True AMCG00017195
TU23515 other upstream 47489 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 365326 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5112862 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5637358 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7371173 42391297 ~ 42397787 (+) True G17697
TU23710 other downstream 770982 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 778552 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 3033355 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 3040163 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 3555011 53335909 ~ 53339655 (+) True G19683

Expression Profile