RNA id: AMCG00017186


Basic Information

Item Value
RNA id AMCG00017186
length 4211
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00017186
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49727583 ~ 49735347 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAACCTGCCCCTCCGTGAACATTAATCAgGAGAAATATCCAGAGGCCGTCAGTCTGCCTGAAGGCTGCAGGGCTGAACAGATGGCAATCAAGAATCCAGCACTGCCAGGATGCATGTTGTATATAGTTTGGTCTATTGAAGTGACTGAAGAAGGAGTTGTTACGCCCAGAATAAATCTTCTTACCAAAATGCCAGAACAAGCTCTGGCCCTGGATGAGAAGAAGGTAGCAGAAAACGCCCCCCACAGATTCCACAATTTGCTGCGCTTGCTGGGAATCGAAGCCACGATTGAGAgtgtaataaaatcaatgtgCATGGAGTAGTATGTAATTAAAACTCATAAGGAGGCTTGTTAGAACTAAGCATAAGGACATATTTCTTGTTAAATAACAGCCAATGCTTTctcgttttattattttattcaatataaacaCCTCTGTACAATCCCACTAAGaaatacttgtaaaatgtaatgccaTCTGTACATATGCCCCTGatgattgtgtctgtgtgtatgagtgtataaatatgaataaataacttgaaaaataaatagttatttcaATATAAAAGACTGAACAGTTCTGTATACAggtttacatttcttattttcacCACAGTGGTTATGTCGGTTTTATTTCATCAATCAGTGGAATATTCACATGAATAGCAGTTATTCAAGTTAACAGAAAACAGTGGCAGCTTTATTTCACAGCTTCATAGacaaacacagaataaatagTCACTGAACTATGGGTTCAGAACATGTGAACTGGTTCTGTCCTGTCCGAGACCGATCAGCTGTAAATAACGGCTCGGTTCGAATGGTGCCATTGTTTTTTGTGGTGCATGGTGTGTTAAGAGAATAAAGATGGACCATTATAGTCTTTCTATTGTTATAACTGATGATTATTAGTGGCTGTCATTAGGATGTTAGAAAAGTGCCTGCAGGGTTTCAAACATCCTAGCCAAACTGCAGGAATAAAGCTATTGAAGTTGCTTATCTGGACCTTTGGTAAGAAgtgtttctaattattattattattattattaataagaataatatattgaataatGTAGCATTAGACCTTTGGTTTGAATAATAGTCCTCCAATAGAGAAAAAACATATGCAAGggtacaaaaaacaatacatttcactCAGTATGAGTATCAGTATTGGTTGTTAAAATTTAAATCTCACTTTTGATTTTATAATGCACAATCTCAGAGACAAAACATTAAGATTGACTTTAATATTGATCTCTTTGTTAAAcattaaagatttttaaaaaaataatgaggaagtgtttattttctgttgtatttcTTACTAATCAAATTGCCAGCAGTTGGGAGATCGTTTAGGCATCCGTAATACAGTATTACAATAACAAGTCATTCAGCTGTTGATGTTACATGTTGTTTGAGTAATACAATGCAAAGGAAGTTAGCACTAGTTCATATTTCAGGGAGTGATCCAAGCTGACACACAATGCAGAGAGTGTCTGGACAAGACCACGGGACCCCCACCGTCCCCCCCACACTGACACGGGTGACACTGTGCAACTGGGATCTCCACAGCGGACAGAAGACAACTTCAATGAAAGCATCGACCAAGTAAGGAAGCCTCCACATACACTGAAAGACGAACAAACCGCCATATTCTTAAGCACCACATACATCTGCATTTAACATTCACTGTGAACTGTTAGTGGGGTAACAAAGCAGGGGCACGTCACACAGTACTTCAATCATCTTGTAGAGTGAAATGTTTTAGCTCTTACACAATTTTAGCTCTAACACAATGTTGGAACAAAAAGTATGCATCTCTTAAAAtaagattgattttaaatatataaaaagtaaataattgtaGGTGTCTTTGACTAACAGGAAGCTGCCCTAAGTGGCACAAGGAAACAAAGGCAGATACTAGAATTAGCAGCATAACTGGAGGTTTGTTATATCCCTTCGTCTCTGCAAAACCACCGTAGCAATTTCAGGCTTTCGCAGAGCAGCAGGGCTGAAATAAGCAAACCTAAATGGCAACCAGATCAAGGCAACACAGTCAGCTTTTACTtcatgatggtaaaacaaaactaaaatgcattttgaaattgactGGCTGATTTACAGGTAATCTCCTCCTAACACTTCATTCAATAACATGGTTTACTCCTCTTGAAGTACACAACgggcaaaataataatcaccGCAAAGGAAACCTGGCCAGTCTCTTCACCCTAGCTTGGATTTCTTCGATCCACTGAACAATAAAcaggtgtttattttaaaaactaccAATAATCGTTAAGCAAAGGACACTGGAGGGTATTGATGTATAAGTGTGCATTAATATAATACGTAGTCGGAGTCAAATATGAGGACAGTATGTTATGAAATCATTACTGGAGTAATGTTGAAATGGGACAGGGACAAACTCACAATCGCTAATCTGATGTCACAAACTGAGAATTCAGGATCAGACTAGTCCAGTTTTCACGGTTATGGCAAATCGTCAGATTGTCTGTCAGTATGGCAGTTTAAAATTCCCTGaagctacatttattttaaataggaaaTTGTAAAATAAGGTCTGTCTGCTGATATTTAATTCTaaatttttttcttcattgtagGGTTAAAAATTAAGAACTCTTAGGTGTGGAAGAAACTGACTGATACAAGGGTATCCACCGTGTTaccaaaagtattgggacaatatatttttttaaacagcatttattaTGGTGTGTAAAAAGAAATAGCCACTCACACTCTTTATTCTGGTGCAGGTCTGTGCTTGGCCTCGCTGACGGCTACACTCTTACAAGGGACACTTTACACCTTTGTGGGTCAGACGGTGGGAATGCTTTGCTCTTCCTCCCCTGCTTTCAGAGCAGCTTGTGGAACACGAATACAATCACTTTGTGATGGGCTACTCTAGTTGATCCCAGAGATGTTCTATACGACTGAAAACGGGACACAGAGTGCTTAAAATACCTTCAGAGCTTTTCTCCTTGAACCACAGTTACACTCCCCCTTTTGGGGCACGATTCCATGCCTCGCTGCCCTTTCACAGAAATGAACAACCCAAAGCTAGAGCCATGGCTCTCGACTGCAGCCTAAAGCTTTCTCCGGCGGAGTGGACACCTGCAGACAGTGTGCCCTGGCCGAGGTCTCGGAGATTCCAGATCTGTCACGGTTGACCGATGATCGTAAGTCCTTATCTGCATGACGTTCTTCACACCCCGTCTCTGCTGTGTAAGGGACAGTCATACCTGCACTATGGCAACTCACACCCATTACACTAGCAGCTGTGAACTACTGGTCCTACTGGCTGCCTACTACCTACTTCCACACATGCCCTCCGTGCAGCATATGGCTACTGGTCCAATCCATCCTGCTAGAAACGGGCAGGTCCCAATACTTGTGGTAACAGATGTACAGACGCGCACCTTGATCGGTGACAAGACAGGTGTGCATACTGTGTACTCATGTTTAGTGTGTACTCCTTCTTGTAGACACTGTAAATACTCGTCTCATTTAGTTCATTCAAATCACTCCACCTCTTTTAatagagaaaaaacaatcaGTCTGTGAAGTTTTCATAGCTCTCCATTCTAGTCCTCCAGTGGTTTCAATTAGTACAGAACAACGCCTCGTTAGGTTTCATTCCCAGCACCCTCTACTGCCGGGTTGAAATGAAAAGGGTAACGGAATAGTAGCGATTCAGGACCTCCTGTAACCGAATCTTTATTTCCACACATAAACAAGGTAGTGACAAACAAGTGGGTTTAATAGTCCctactgtgcttttttttttctctctctctatccttcgttttttttgttaaatgacTGTTAAGGGTTTAACATCTTGGTTTACAAAAACCTCTTTAGTGCTGCCACTTGTAAAACCTTCCCAACACATGAAACCTTCAACCTAAAATCAACCACCACAAGCCTTGGCACAAATGTACACTGTAGTATATGGAGCATGGTTTAGTATGACCAGATGGGCACCAGAGCCATCCCACACCCATCCGTCATCAGAGCGACACGCCGACGCGCCCAACGCTGCGGGGAAACGGCACCCGGAGAGAACGGCCACTAGAGGAGGAGTCATCTGGTAATCTCACTGCAGTTCTACCGTCCGGATTAATGTACCTTCAATATTTACTGTAAGTTATGGCAAacgccccc

Function

GO:

id name namespace
GO:0005694 chromosome cellular_component

KEGG:

id description
K11508 CENPP; centromere protein P

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23537 lncRNA downstream 648 49726320 ~ 49726935 (-) True G18962
TU23536 lncRNA downstream 1908 49725197 ~ 49725675 (-) True G18961
TU23513 lncRNA downstream 18323 49707666 ~ 49709260 (-) True G18945
TU23444 lncRNA downstream 233439 49489686 ~ 49494144 (-) True AMCG00017178
TU23442 lncRNA downstream 234278 49489686 ~ 49493305 (-) False AMCG00017178
TU23548 lncRNA upstream 27850 49763197 ~ 49765192 (-) True G18970
TU23614 lncRNA upstream 325500 50060847 ~ 50071504 (-) True G19030
TU23629 lncRNA upstream 420083 50155430 ~ 50155834 (-) True G19043
TU23637 lncRNA upstream 452547 50187894 ~ 50190884 (-) True G19049
TU23643 lncRNA upstream 535061 50270408 ~ 50270657 (-) True G19055
AMCG00017187 mRNA downstream 21062 49697995 ~ 49706521 (-) True AMCG00017187
AMCG00017179 mRNA downstream 51749 49669201 ~ 49675834 (-) True AMCG00017179
AMCG00017180 mRNA downstream 74362 49644147 ~ 49653221 (-) True AMCG00017180
AMCG00017177 mRNA downstream 138181 49579589 ~ 49589402 (-) True AMCG00017177
AMCG00017178 mRNA downstream 234416 49487197 ~ 49493167 (-) False AMCG00017178
AMCG00017191 mRNA upstream 109120 49844467 ~ 49845126 (-) True AMCG00017191
AMCG00017200 mRNA upstream 596424 50331771 ~ 50351799 (-) True AMCG00017200
AMCG00017199 mRNA upstream 641918 50377265 ~ 50384569 (-) True AMCG00017199
AMCG00017203 mRNA upstream 712038 50447385 ~ 50456112 (-) True AMCG00017203
AMCG00017208 mRNA upstream 788211 50523558 ~ 50526003 (-) True AMCG00017208
TU23267 other downstream 1233234 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 6862967 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 8510352 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 11668644 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 1695508 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 1710240 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 1710240 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 2120899 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 3123243 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile