RNA id: AMCG00017187


Basic Information

Item Value
RNA id AMCG00017187
length 3836
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00017187
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49697995 ~ 49706521 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATGATCCAATGCTGTCGCACCGCAAGGGTGGTAGAAGTTGACCGGTTTACTGGTCCCAAATGTAACAGTTTCagtatgaataatatatattaaaataattgccgGGAAACAATGGACTTGTTTGTTTACTTCTCAGACTAATCATTACCAGGATCTCTGCTCACATTTTATatgggaagaagaaaaagagcaACGTGGATCAAGCCCAGGTGTGCACTTCGGCATCAGGCTTTTTGATTGCCTCTTTTGGAAGTTCACCAGGAGACCACTGTATGGAGTACCCACCGAGGAAACGCCTTAAGGGCCCTGAACGCAGTGTGACCTCCAATGCTGACCCTTTTGGTGATGATGAGGATTTCACACAAGATGATCTTGATGAGATAGATGTTATTGCATCTCAGGCAATAACGGAGGACATTGTAGTGAAAGTTCCTAAAGTGAATTTGGGTTCAATTATCTCTTCAACGGGGGCAAAGAGCAAAGCAGCGTCAGGAACCAGAGACAGCTTTGCTCTGGCCAGTAGTCATCATGTGAGCGGTGATGCTAGATACAGCAACTTGACCGGCAGTGACAAACATGCAACAGAGCAACCTTGTGGTAATGGAGATCAGTCTAGGAAAGACAGAGAAACATTGTTCTATGAGTCGTTTGAAAGCCAGCATGCAGAGCTTAAGAAAAAGTTAAAAGGAGTGGAAGAGCAGCTGCTGATCAGGAATGGTGAGATCCGGGTGCTGCGGGACTCACTGCGACACCTtgagcaggagagagagcagcagaggaAAGCACAGCTGCTTGTGGAGCAGGAGAGAGCACAGATCCAGGGCAACAGGGAGAAGGAGCTCAATAAGAAGATTCAGTCCTTGCAGTCGGAGCTCCATTTCAAAGAagcagaaatgaatgaaatgaaaatcaagCTGCAGACCTGCGAACGAGGGAACAGACTTTCTGCTTTTTCCGTTACAAAAAACAGCCCCAGACGGAGCTCTTCTGGAGTCGTGCCACAGGAAGGCCCTTCCTCTCCCGCAGTCAGACGGAGCTCGTTTCTCTCAAAGGAAACCTTTGCTACTGATTTACCCAGAACGGCTTCGCCTGTCAAAGTCCACAAGGTCAACCAGTGTTTGTCCTCACAGGAAGGGTCCATTCTGCTCAACCTTTTGCTTCAACACCCCCTCGACCCAAGCCCTCTAGGACTGTGCCACCTGCTCTGCATCACCCCCGAGGCCCTGCCCAGCTCCCTTTCTCagcacaaatatttcaaatcAGCATCAACTGCATCAAGCGGTGTGTCAACAGAGAATAAAACTACCTACAGGCAACACAATGGCTTTAATCAAGTGCAGAGCCTTGCCATTTCTGGGATTAACATGCTCGCTCTTGACCACCTGTCAAACGAACCCAGTTCTAACATCGTCCAATCACACGCAAGCAATAGATGCTCAGCTGCAGTCCACCTCTTACCTCTATTAGAGTATCACATTGGCATGTTCTGCCAGGCACTGGAGTCCGCAGAGACCGCTGGGAAGAGTCCTTTAAGAGGAAGCTCACTTTCGGTCTCCTCTTCCGAAGGCAGTCTGAGCACCACGGCCGAGGAGTCCCTGGGCAGTCTGGAGGAGTTTGCTCTGGCAGCTCTGAAGGCTCTGTACCATCTCATCTCGCAGAGCCTGGAGGTGGTCCACGCTCTGCTCTCCAACAGGATGCAAGAGTCAACGAAAGACTGTGCTCCGAAGGTTGAGGTTGAGGAGTTTAAATTGAACTCGCTCTCTTTAGCTGAAGGAAAACCAGGATCTTCTGAAGCTCGGGAGACGTCCGACCAGCTCCGTCACACGGTGGAGGTCCCTCACCCGTTGTTCAAGAGGCTAATGCAGCTGGCAGACCCCACATTCGCCGGGGCCGCCCTTCAGAAAGAGACGGTGTTGGCCAGCAGTTTGACGACGCTGAACATGCTGGCGGAAAGGGCTCCCGACGCACGTCTTGTTAGtttCAAGTGTTTCCTTGGCAGTCAGCCCATGGTGAGATGCCTATCGGCCGACTCCTCGTACagaactgtctgtctgtctgtaagtCTGCTGGGTCTCACAGCCAACCATCGGGATGTGGCGGCTCAGCTCTGTTCACATTCAGAAGTGTGTCCTCTCCAgaaattatacatgtatataacaTCCAGACCTGACAAATCAGTCACTGACAATgactggactctactggaggtgGAGGTTGTGCGTTTTTTAACAAAGCTGTGTACCCAGAGTCCTTCCTTGTGCACTTCCCTGGTGGAGCCTTCCTGTCCGTGCAATAATGAGGTCGTGCGCACCCTGGTGCTGGTTCTGCACAGGCAGTGGCTGGAGGTGCGCGTGCGCGAGTGCAGGGAGGGGCGCGGCGGCCCACTTTGGGCCAGCCCAGCCGTGGTGCTGCTCAGGgaggcgctgctgctgctgcactggCTGTCCCAGAACGATGCCGGCTTCACCGAGCACTGCCTGGACGTGCTGCACATGTACGAGCAGGTCATCCCGGCCATCCGAGACACCTTCCGCAAGATCCCCAACCTCATGGAGAGCGAGGAATTGGCTCTAGAAGAAATCTGTCGGCCAGAGGCAGACACAGACGATATGGACATCGACTATGAATAATAGCCCTCCTTCCTCTCactccagtctgtttctgaaaagGAATGTGAACGTTTTCTAAAttgctcttctgtttctttcaCTTCATTctgtattatgatttttttaaaacactgagtGTTTTAGTAATGTCTGCAATGATGAAGGCACAATtctgtaactttttttaaattatcatttaaaaccAATCTATTAACAACTTTAGTTaaggttttaaatgtttcctttgtttCTCCTGCAGTGTTATTTTTACGTATTCCTGTCagtgttgtctttgttttgttgctggGAGCTGTTACATCTTCTCTATTTATAAATTTCTATGAAATTTAAGTCACTTTCCTTTACTGATTATGTTCGTAGGGTCTGAAAAGGTATAAAACCACTTCAGTTTTTGTATCTTTATaatgaaatagttttaaaacCGTAAATTACTTATGAATGTATAAATCCGTTTCAGACGTTTTTTTTCCTGGATACGTGACCTTTAGGCAACCTATAGCCttagtatatttattattaaatcctAGGAGATACAAACCCATTACCTTTTTAGTGGCCTTCAATTTCCCCATGTATTGTTCTCCCCACACCAGTTGCTATTGTTCTGTCCTTACACCTTCacaatgtgcttttatttataagCAAGCAAATACAGCCCTGATACATGCATGTCTGTTATCTcctatcttaaaaaaaacatatctgaaccattttaaaagtctaATTGTGATTCCTCTCCGCAGAGGAAATGCCATCAGGGTAAACCAGATGAGCATGTAGATAAATTGTCcgcattttaacatatttgacaGTTAATCTGGGGTGTGCATGGCAATGTGCCAGGACTTTGTCCAAGTCCAGCTTCCTATGAATGTCCGAGACTCTTTCAACGCCTTCTTGTGATAGTGAGAACAGAAGTTAAAGCTTCTGTTAACTGATGCACTTTTCTATatagaaatgaataaaaacctGCAGGCATTTGTATGTAAACCTTTTCCAATTGTTGGTTGTcgggaatgtttttttctaaatgaagGTCATAATACCTCTCACCTATAAGTATGTAATAAGAAAGTTAATAAATCCCATAATAAAACTACCCCTTCTATATGCATCAATAAATGCACAGCCTGGAAACTATAATCTTTTCAGGGTCTATGGAGACTATTATTTCAGGCCactatggaaaaacaaaagacgGTCC

Function

GO: NA

KEGG:

id description
K10905 ATRIP; ATR interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23444 lncRNA downstream 203851 49489686 ~ 49494144 (-) True AMCG00017178
TU23442 lncRNA downstream 204690 49489686 ~ 49493305 (-) False AMCG00017178
TU23370 lncRNA downstream 328444 49368618 ~ 49369551 (-) True G18832
TU23369 lncRNA downstream 329933 49367481 ~ 49368062 (-) True G18831
TU23368 lncRNA downstream 331554 49365206 ~ 49366441 (-) True G18830
TU23513 lncRNA upstream 1145 49707666 ~ 49709260 (-) True G18945
TU23536 lncRNA upstream 18676 49725197 ~ 49725675 (-) True G18961
TU23537 lncRNA upstream 19799 49726320 ~ 49726935 (-) True G18962
TU23548 lncRNA upstream 56676 49763197 ~ 49765192 (-) True G18970
TU23614 lncRNA upstream 354326 50060847 ~ 50071504 (-) True G19030
AMCG00017179 mRNA downstream 22161 49669201 ~ 49675834 (-) True AMCG00017179
AMCG00017180 mRNA downstream 44774 49644147 ~ 49653221 (-) True AMCG00017180
AMCG00017177 mRNA downstream 108593 49579589 ~ 49589402 (-) True AMCG00017177
AMCG00017178 mRNA downstream 204828 49487197 ~ 49493167 (-) False AMCG00017178
AMCG00017174 mRNA downstream 220691 49455494 ~ 49477304 (-) True AMCG00017174
AMCG00017186 mRNA upstream 21062 49727583 ~ 49735347 (-) True AMCG00017186
AMCG00017191 mRNA upstream 137946 49844467 ~ 49845126 (-) True AMCG00017191
AMCG00017200 mRNA upstream 625250 50331771 ~ 50351799 (-) True AMCG00017200
AMCG00017199 mRNA upstream 670744 50377265 ~ 50384569 (-) True AMCG00017199
AMCG00017203 mRNA upstream 740864 50447385 ~ 50456112 (-) True AMCG00017203
TU23267 other downstream 1203646 48489127 ~ 48494349 (-) True AMCG00017158
TU22128 other downstream 6833379 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 8480764 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 11639056 38027483 ~ 38058939 (-) False AMCG00016959
TU23976 other upstream 1724334 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 1739066 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 1739066 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 2149725 51856246 ~ 51860142 (-) False AMCG00017251
TU24337 other upstream 3152069 52858590 ~ 52866419 (-) False AMCG00017292

Expression Profile