RNA id: AMCG00017188


Basic Information

Item Value
RNA id AMCG00017188
length 2142
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00017188
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49790879 ~ 49796155 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTAATCTAGCCCCGAAATTGCTTTAGCGGCAGTGTACACAAAGAAAAGTAGTGCCGATTCCAGACGAGGAGCACTGCCTCCTATCTACCCCAGGAGCAAACAGTTAACCTTCAAGGATCAGACAGAGTCCTAGGAATCTGTCTTCAATTGGAAGAAACAAAGACGAagacaacatcaacaaaactaACAGgAGAAATAAAGTTAATTGAACCATGGGAATTCTAAATCATTGGTCAGTTCTCATGCTTCTACTTGGGGCAGAAGTGATGTATCAGCAGGATTATGATGAGCCTTATGATTCATATGATTTTGAACCCGAGGTACCACCCGATATAGAACCACCTGCTTTTCCCCATCATACCGATTATGTTAATGTATACGTCCCATATCCAAATGAGTGTGCCAGGGAATGCTTCTGCCCACCGTCCTATCCTTTTGCGATGTACTGTGAGAATCGGAAGCTGAAAACCATTCCCGATATTCCTCAGCACATCCGTCACCTCTATATTCAGTTCAACGAAATTGAAGCGGTGAACGCAAAAGCCTTTGTCAACGCTACGTCTCTCAGAGATATCAACCTGAGCCATAACCACATCAAATCCTCCATGGTAGACCGTGGTGTATTTGGCAAGCTCAAGAATCTCATCCAACTTCATTTAGATTACAACAACCTGGAAGAAGTACCTGCCCCTTTGCCAAATACTCTCGAACGACTTTTCCTCGGGTTCAACAAGATCTCCAAGCTGTCTGCAGATGCTCTGCAAGACCTGGCCAAAGTGACCATGCTTGATCTCTGTAATAACAAGCTCACAGATGCAGCAGTCAAGGGAAAAATCCTGTCGGGCATGAAGAGCCTCATGCAAATAAACCTGTGCAACAACAGGTTGAAATCCATGCCTTCAGATCTCCCAGCTTCCTTACTGCAACTGTCTTTGGAGAACAACTCCATCTCTTCTATCCCTGAAGGCTACTTTAAGAAAACGCCAAATCTCATGTCCCTCAGGATTTCCCACAACAAGCTGAAGACTGTGCCCTTCAAAGTTTTCAACCTGTCTAGTCTGATGGAGCTCAACCTTGGTCACAATCAGTTGTCCAAAGCCTTCTTTATTCCAAGAGCCCTGGAGCACCTGTATCTCAATCACAATGAGTTTCTTGATCTCAACGTTTCCCTCCTGTGTCCTACCATCCAACCGACATCACCCAATTTGCTGACCTACATTCGCATTGATCACAACAAGCTGAGAGTCCCTATAAACACCTACATCTACTTGTGCTTTCCTCGGATCCAGAACATTTTCTATGGTGAACAGAGAGTTGATGACAACTACCTCCCGCCTCCAGTTATTCAACCATCGCGTCCTCGTTCTAGAGGAAATGTACCAGATGAGACCCAATTCGAACCATCTGACTAGACcataaatttaaaataactggaaCATGTAAATACTACATTGTGAAAAGAtggtataaaaaatacattagctATTATCAAATCAACTAAGTATTTACCCAGACTGATTTCTTTATTGTACACAGGGTAATTTCATTCTTCTTCAGAAGATGGCAGATGATGTGGAGTTCTGCACATGTATCAGATAAACTAGCCAGTAATGCATGAGAGAACAGATTGTTTGTTCTGCATAGTTGAATGTGTTAATAACATAGCAGGCATGCATGGCTGAATAGCACAACTTAGTTGGAAAGTATCTATTCAAGTTCATTAATTGTGTAAGCTAAGTTTCCTCCTGTTTAACAACTGAAATGATTGATCAGTGGAGCTGGTGGAAACAGAGACATGATTTCCCCAAGTATACACAGTCAGGAGCATTTTCTTTCCCAACTACCTTTCTCCTATGCATAATAGCAAAATACCTTAATTACTTACCATTTGTTAGTCTGCAGGCATACATACTTAACCTTAACTTAAGTTCATATAAAAAGCAGAagatacataataaaaaaaatgtacacattgtCAACATACTGATTACTTAACAAAGGTTAGCAACTGACaatatggtaaaataataaattatgtaattcttttgtctttctttaaacCAGTAAACAAtggttacttatttatttgtccaGTGTCAACTTTGTTATTTCTCATATtaacatagtaataataataaag

Function

GO: NA

KEGG:

id description
K08124 OMD; osteomodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23468 lncRNA upstream 116953 49673085 ~ 49673926 (+) True G18909
TU23467 lncRNA upstream 120590 49582264 ~ 49670289 (+) True G18908
TU23406 lncRNA upstream 297530 49436264 ~ 49493349 (+) True G18865
TU23352 lncRNA upstream 408684 49380603 ~ 49382195 (+) False AMCG00017167
TU23309 lncRNA upstream 579623 49206808 ~ 49211256 (+) True G18791
TU23626 lncRNA downstream 358203 50154358 ~ 50154694 (+) True G19040
TU23628 lncRNA downstream 359298 50155453 ~ 50155825 (+) True G19042
TU23647 lncRNA downstream 536311 50332466 ~ 50333366 (+) True G19058
TU23648 lncRNA downstream 537605 50333760 ~ 50334506 (+) True G19059
TU23650 lncRNA downstream 545262 50341417 ~ 50342150 (+) True G19061
AMCG00017185 mRNA upstream 9981 49768960 ~ 49780898 (+) True AMCG00017185
AMCG00017184 mRNA upstream 25687 49748843 ~ 49765192 (+) True AMCG00017184
AMCG00017183 mRNA upstream 63312 49713467 ~ 49727567 (+) True AMCG00017183
AMCG00017182 mRNA upstream 81800 49707535 ~ 49709079 (+) True AMCG00017182
AMCG00017181 mRNA upstream 93031 49678164 ~ 49697848 (+) True AMCG00017181
AMCG00017189 mRNA downstream 9672 49805827 ~ 49811967 (+) True AMCG00017189
AMCG00017190 mRNA downstream 25578 49821733 ~ 49831079 (+) True AMCG00017190
AMCG00017192 mRNA downstream 55143 49851298 ~ 49905581 (+) True AMCG00017192
AMCG00017195 mRNA downstream 197207 49993362 ~ 49997451 (+) True AMCG00017195
AMCG00017194 mRNA downstream 215777 50011932 ~ 50031382 (+) True AMCG00017194
TU23515 other upstream 69408 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 387245 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5134781 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5659277 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7393092 42391297 ~ 42397787 (+) True G17697
TU23710 other downstream 755725 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 763295 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 3018098 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 3024906 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 3539754 53335909 ~ 53339655 (+) True G19683

Expression Profile