RNA id: AMCG00017189


Basic Information

Item Value
RNA id AMCG00017189
length 2560
RNA type mRNA
GC content 0.38
exon number 6
gene id AMCG00017189
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49805827 ~ 49811967 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTGGCAGCTATTCATGGAGGCTTTAAATACTGATTTGACAGATCACATTTTACTCCCAGGCACTAAGAAAATAGTCCACCATACCCTGAACTGCATTACTAACAACATTGTGCATGTCCTTGTACCCACAGACAAGATGATCAAACTTagacctttatttttttcctttatactTGTATCTTGGATACTCTCAGCAACAGTTGCAGAATTTAACTGGGGCTCATACTACATGCAGCAGCCTGCAATTGCCAATAAGCAGGATATACTACTGAACGATGAAGTCTTCATGGAAGCGAAGAAGCCAAagAAGGTACTGAAGACCTTTCCAGACGatgacaccccccccccagacaCAGATCTTGGCGACTATGGCGCAACTCCAGCTCCTGGTCCAGAAGGGGATGCTGAGCTTCCAACTTgcctcctgtgtgtctgtctgagtgGCTCAGTCTACTGTGAAGAAGTTTTACCCGTAATTACAGCTGTTCCAACTTTACCAAAGGAGACTGCGTACCTTTATGCCCGCTACAACAAAATAGCAAAGATAAGTGTGAAAGATTTTTCTAATTTCCcCACTCTGAGAAGAATTGACCTGACTGGGAACGCCATTAGTGAAATTGAAGATGGTTCCTTCTCAAAGCTTGTCCTTCTTGAAGAGCTTTCACTTGCTGAAAACAAACTGGTCAAGCTTCCTGCGCTCCCAGCAAAGCTTACCACATTTAATGCAAACTTCAACCGGCTCAGAACCAGGGGTGTAAAAGCTAATGCTTTCAAGAAACTCATCAACCTGTCGTACCTCTACCTCGCCAACAATGAACTGGAGGCCGTTCCACCTCAGCTTCCGGAGAGCCTGCGTATTCTTCATCTACATAACAATAACATCACTACAATCACAGACGAAACCTTCTGCAAAGGCAACAACACCCGCTACATTCGTGCCAACATGGATCAGATTCGACTGGATGGCAACCCAGTGATCTTAGCCCAGTATCCCAACAGTTTCACTTGCCTGAAGTCACTTCCTATCGGACGATACTACTGAATTGGCTCTGTAGAGCGGAGAAGCGAAGGATTTACAAGCAAGTAGATTTCTCCAGCGCATCGTGCTGTACAGACCAACAAAGAGAAAGTCATTCCTGATATAAACGCCACTCTGTGCAATCTGTGCGACTGCTTATTCAGTGTTTTCACAGGCAAGCAAGCAAGCATCAAAACTAGTCACCAATGTTAGCCTGCGTTAGAACCGGCATTGTGTCTTTCTGATGTATGCCAACTTTGCTTTTTGCTAGAATACTCTTGAACTCCACAGACttcaaaagcaaataaatgctcAATTCCACACCACACACTTCGATGTAGGCATACAAATATTGTTTGATAACTTTGGATCACATGTAAATATATCCATCTTCCTCTTTGCTGATTAATAATTACAGTTCTTCATCGGTGCATGGTCCCTGAGGGAAACTTTAAGCTGATATTAAGTGTTGTGTGTATCCTGTGAACTGGcttaattttttacatttaatagatCTTTTTAGGGTTCACAATTAAATCAAGTTGTTATTTGATGTACAGTAACATGATATTTTGTAATAGCTCATCTTTTTTATTAGAATATGCTAAGATTCTGTAATCCGTACTGTACGTGAACACAAAATTGCTAATTTTctataattaaaaaggaaaactgagAAAAGTATGTTGTATAAAGTGAATGTGACATATCtaattttcttcattaattacaaaagtaaaaagtattattttgagCCTTGGTTTTTTGCAATTTTAAGTGCCTCCCTGTTGTGAAATCACTGTAAATGTGGGCTACATTTTTGACCAATAGTTACTGTAGACAGCTATGATGTTAATGACGctgacaattacattttgctCTATGTCAtaagaaatggaaaattaaaccTATAGATTATCTCACCTTTGAACATTTTTGCAGAAAAACAGTGTCTGGGAGGGTTTATTACACAAGCAGAATGGGAAAAACTGGGTTAAATCTTATTCCTTCATCAAGGCCAAGTTGGCCCCTAGTTTCAGCACTTAATCCAAGTAAATAATGGAATTGTTTCCACATTGCATTTGCAGATTGATTCTCGATTTTTCATTGCAATCCTTCGATGGAATATGTTACTATTTTGTCATTAAGCCAGTTTTCTACACATATTATGAAAGTAACATAATGCCAGAAAATGAATATGGACACACATTTCTCCTCTGAATATGACTGTAGGATTAATCTGTTCATTTATGACAACATACCTATAACTTTTTTTAAGCCAGAGATTGTACCAGTTTTAGTGAAATGTGGAATAAAACTGATATCAAATCATTCTAAATTTTTGaaagttattatatataattagaacTGAAATGTAACcgttaaaacaaaaagctaaatttaaaaaattaacCAGTTAaggaaattaagtaaaataaatcccTACTACTCTTTACAATGTTATAGGGACATGGTGGCAACATTGCAATAAAGTAAACGCTGAACAAAATGAGGTTATGGCAACAGGAATTTGTCGACT

Function

GO: NA

KEGG:

id description
K08126 OGN; osteoglycin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23468 lncRNA upstream 131901 49673085 ~ 49673926 (+) True G18909
TU23467 lncRNA upstream 135538 49582264 ~ 49670289 (+) True G18908
TU23406 lncRNA upstream 312478 49436264 ~ 49493349 (+) True G18865
TU23352 lncRNA upstream 423632 49380603 ~ 49382195 (+) False AMCG00017167
TU23309 lncRNA upstream 594571 49206808 ~ 49211256 (+) True G18791
TU23626 lncRNA downstream 342391 50154358 ~ 50154694 (+) True G19040
TU23628 lncRNA downstream 343486 50155453 ~ 50155825 (+) True G19042
TU23647 lncRNA downstream 520499 50332466 ~ 50333366 (+) True G19058
TU23648 lncRNA downstream 521793 50333760 ~ 50334506 (+) True G19059
TU23650 lncRNA downstream 529450 50341417 ~ 50342150 (+) True G19061
AMCG00017188 mRNA upstream 9672 49790879 ~ 49796155 (+) True AMCG00017188
AMCG00017185 mRNA upstream 24929 49768960 ~ 49780898 (+) True AMCG00017185
AMCG00017184 mRNA upstream 40635 49748843 ~ 49765192 (+) True AMCG00017184
AMCG00017183 mRNA upstream 78260 49713467 ~ 49727567 (+) True AMCG00017183
AMCG00017182 mRNA upstream 96748 49707535 ~ 49709079 (+) True AMCG00017182
AMCG00017190 mRNA downstream 9766 49821733 ~ 49831079 (+) True AMCG00017190
AMCG00017192 mRNA downstream 39331 49851298 ~ 49905581 (+) True AMCG00017192
AMCG00017195 mRNA downstream 181395 49993362 ~ 49997451 (+) True AMCG00017195
AMCG00017194 mRNA downstream 199965 50011932 ~ 50031382 (+) True AMCG00017194
AMCG00017193 mRNA downstream 233251 50045218 ~ 50061365 (+) True AMCG00017193
TU23515 other upstream 84356 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 402193 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5149729 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5674225 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7408040 42391297 ~ 42397787 (+) True G17697
TU23710 other downstream 739913 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 747483 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 3002286 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 3009094 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 3523942 53335909 ~ 53339655 (+) True G19683

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU750693 False 384 lncRNA 0.46 2 NC_048571.1 87233002 ~ 87233406 (-)