RNA id: AMCG00017190


Basic Information

Item Value
RNA id AMCG00017190
length 4599
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00017190
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49821733 ~ 49831079 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCGCTGCGCGCATGTGTGCGGAGATGCGGTGCAGTACGAAATGTGCTTTTGCTGTTCAGCTATTTGTTTTATGCCCTTCATGTGTAGACTAACATACTGGATGTACACAACTTAATTTTGTAGCTGACTTTCAATGACAACAAATCTATTGTGTATGGACCACCGATTCGGTTCACTGTAATTTGACTGAGGATAGTAGTTACCAGATAAAACATGGACGAGAATAAGATCATGAAACGTCTGTATATCGGTGGGTTAAACCACAGCGTTTCCCAGTCGGAGCTCCAGCAGAGGTTCGGGAAGTTTGGCGATGTGACAGATGTGGACATTGTCACCAGGAGAGACGAGCAAGgaaCCCCTGTTAAAACCTTTGGCtatcttaatattaatatcactGATGGAGAACTTAGAAAATgTATCTCTGTGTTGAATAAAACTAAATGGAAAGGGGGAACACTATACATTGAATTGGCCAAAGAAAGCTTCTTACACAGACTGGCTCAAGAGCGGCAGCAAGCCGCTGAGAAAAAGCAGACTCCACAAAAGGAGCAGAAGCCTATGTTCATGGACTCCCTGAAGAACGCGGGCGTGGAGAACTTCCACATGAAGTCGGCCGTACCAGGGACTGAGGTTCCAGGCCATAAGGATTGGGTTGTCAGTAAATTTGGGCGCGTTCTTCCTGTACTCCATCTGAAAGATCAAGGCAAGAACAAGATTGTTAAATATGACCCTTCAAAACACAGccacaacataaaaaaattagACCAGACAGCGGATTTACAGAACTCGACTCCAATCTCCCATCTGACATGGGAAGTGTCCGGAGGTGATGACGAAATCAGCAAGAAAAGGAGAGGAGAGTTTCCTCCGCCCAAAATCCGTCCCAAAAAGGCTACGAAGGATCCTCCGAGCAAGTCAGAGAAAGCAGTCACAGATTCTGACTTTGAGGTGGTGAGCAACAGGTCCTTGCACTGTCTAGACAGACAAGGAGTAAATATGTCTACGTCCAACCTCTGCGCCAACACTGCCTTCAGACTGAAGGCTGAAGAAAAGACCATTTCGAATAAAAATCAGCCTGCAGCGCTGAAGACCCGCCACCGGTCGATGGGCTTGTTTGACAGTGATGTGGATTCTGAGGAGGAAATAAGGATGTTTGTAAGGCAAGAAAATATCCACAACAAAAGCTTAAGTGCAGAGGAGATGGATACCTTGGAGGTGGTTGGGGATGACTTCATTGTAAAGCCTAATGCGTACTGGTCACAGCAAAAGGCAAAGAATGGAAGTAGCAGGATGACCGTAGAGACCTCAAGGGAGGCCGACAGTGACCGTGAATATGATTCGGCCGATACAGATGAAATTATTACACTGTGTAAAACTCCAGCTGTCTCCGTCCACCAGAGAGAGCATGCAGAATCCAAAATAACTGCTCAGAATGAACCACAGAGCCATTTGTCAGCAATTCCTCTGAACGGAAGTGACTCTAAACCCTCTAAAAGCACAGAAAGAGCTAAGAATATAGGATCAAAGAAGAAAAGGTCTCCCCCCTCTTCACCCAGTGAGTCAGATTCGAGCTCCAGTGACGAAGGATCGGAGGAGAGCGGGGACTCTGAGTATGAGGCTATGATGGAGAACTGCTACCGTTTAGAAATGTCTTTAGCCGACTTGGAGCGACTCGCAAATGAATCGGCAGAGCCCACAGAAGAAGATGGCGGGGAACGTGAGGAATCGGGTTCCCAAGCTGGATCTGGTCAAGAACCTGAGCCAACTCTACATTCTGAGATAAAGTCCAAAACCCCGTTGCCCTCTAAGAAAGGCAACACACCCGAAGATATTCTAGCTGCTATTTTGGCGGAGGATAGCAGTGATGAGGAAAACgacaggaaaaggaaaaagaaaaagacccTTCCATTGAACCTGCCTACCTTTAAAGGGACAAAGACTCTTGTGGAAGCTGAGCCAAGGACTGAACTGGGACTCTGCCCTAAGAGGAAACAGGAGGAGGACCATTTGAGGGCTGAGCCTTTCAAGAAGCAGAAAATGTCTTCCACCACTCGGGAGAGCCAAACGTCTTCCTCGGAGGCTAGCTCTTCAGAGGATGAGATGGAGGCAGGCTGTTCCAAACTCCCTCCGTTTAAAGGAATCCAACCCATTCCCTTAAATGACGAGAAGAAAGCAGGCAGTGAGAATCGGGCGCCCAGTAAACATCTCGCCATCGATATGGACGAGTCTGAGAGTGGGGAATCGGACCTGGAATCCAGTAGCTCGCATGGTACAGACACAATCGCAAAACCTGAGCCTAAAGAAGAAAGGACAAACCGTTCTAAGGCGTGTGAAGACGACAGCAGCTCCTCGAGCGACAGCAGTGGAGACAGCATGGAAGAGAGTGATGAAGAAGAGGAGATGGAGAAGAAAGTCCCTCCCAAAGTTGACCGTGTACAAAATACCCCTCTAAAACAGGCAGCGCAGTCAACTAAGAGTACAGACTTGTCAAGAAAGCCAGTCGAAAGTGTCCACAAGGCTGGCGGCCCTGTCTGTAAAAACGGAGAAGATAATGGAAACAGGAGTTCCCTTTCCACTTCGGACAATCTTCTGAAGCAGCAGCAGGACAACGAGAAGCGTCTGGCCGCGCTgcagcagagacagagggaggccGAGCAGCAGAAGAAGCTCATTCAAGGTGCTCTGTCTAAGTTGGACATGCCTCAGAGTAGTAAAGGCAAGCATATTGTGTTCGATTCGGACGAGGAAATCCATGAGGAACCGAGACGCCGCGAGGCCGGAGCAGAGTCCTGTACTGAACTGAAGAAGACCCTGTTTGAGGAAGAGGACGACTCATCGGGACAGAGTTCCAGTGAAGAGGAAACTGAGGCGTTGCCAAAACCGGACCTCAGTGCGAAGGAATATAAAAAGCAAGCAGCAGGAAAACTCTTCGACAGCAGTGATGAGGAGGAAGAAGTAGAAAATGAAGAGGATGAGAAACGATTTCAGATCAAGCCTCAATTTGAAGGCAAATCTGGACACAAGCTCATGGCGATGCAATCGCGCTTCGGCACAGATGAGCGATTCCGCATGGACTCGCGGTTTCTGGACAGCGAAGAGGAGTCTAATGATCTGGAGATGTTGGCGCCCTGCACTACGACCCCACTCGAGAGGAGCATGCGGCTTTTGAAACCAAAatggaagaaacaaagaaagaaaggcagCAAGGCCGCCCGAAGGAAGAAGCGTGAGCAGGCGGAGAAGCTGCCCGAGGTCTCTAAGGAGATCTACTACAACATCGCCGTGGACTTGAAAGAGGCCTTCGGCGGCACAAACGAGAAACCTGAAGAAAAGCAGGACGTTGCGTgggatgaagaggaggaggtggaggaggctATGGAGGAAGACGCCCCCGCACAAAGCCAGGAGGCACAGCATGCTTCTGGTCCCTCAGCTAGTATCAGTGCTGCGAAAGACGACGCCACAGGGTTTAAATTCTCTTTTTTTGGAGACGATGCAGTCGAGGAACCCAGTGCCAAAGCAGGTGATTATACAGTCGAGCTGCTGAAGTCTGCCAAGGTCTCGTGGCAGGAGGACCCTCGGTTTCAGGAGAGCAGCTCCGAGGGGGAAGACGAGGAGCTGGGAGAGCAGGCCCTTCCTCATGTCACGACGCGAGGGACCTCAGACTTTCTGCAGAACTGGGAAGCTTGAGGAAGAAAGAGGGCACTGGGAGGAAAAACGCACGTTGTTGATTGAGgaaTACAGGAAGAAGCATAAAGATGCGCGACGGAAAGTCATGGCAAAACAAAGGACCTAATCGGAGCCACAGAGCCCGTTCCctacatgtttgtattttttccaaattagAGCCTTTTTTGTCAATTAAATTTCAAGAGCAATGACCTTTAAGACAAAGGAAGTTAAtgtgacatgtttgttttttcaatcaagCCCGTATATTTCACATATTCTCTGAactctgtatttaataattttccacagctgattttttttttaacaattagcCCCACAAAGAAGTTTTGgttgtaaattaatatacaatCTGCTGTTGAAATAATTCATTAAGGTCATTGAAACATTCAATTTTCAGAATGCTTTATTTCACCCTATTTACTATAGCAGTTAACCTTGgaactgtatatttatacataaatactgtACAATGTTCAGTGATTTGAAATTGCTCTAATAAAATCGGTCTAAAAATCTGATCTGTTTGTCACCACTAGAGTGTGCTGTTCTCGTGGAAAACCCAGTCCTGTACCGTCCCAATCTTCAAACCACACGGCCCTGAAAGCCAGAGTCGGCGGTTGGGGGTCTGATTTCCTTGGCTACTGCAGTGTCATTTGCAACATTTTTGACAAGTTTGCCACCTTGGGTGCTAATTTCTGCAAAAACTGAAGACATTTGGCACAACTCCTGTCAAAGTCAACAGTACCGCGAAACACCGAGTGGATCTTAAAATGGCAGGAAATGAAACCCTCCTCTCAGTCACTTCTGGATGAGTCTTTATTACCGGAAAAGCAGCTCACATTTTTCCTCACAGGGTTTTTTCCTATTCAGATCTTGtaatatttactttacatttacattaaag

Function

GO: NA

KEGG:

id description
K14836 NOP8, NOL8, NOP132; nucleolar protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23468 lncRNA upstream 147807 49673085 ~ 49673926 (+) True G18909
TU23467 lncRNA upstream 151444 49582264 ~ 49670289 (+) True G18908
TU23406 lncRNA upstream 328384 49436264 ~ 49493349 (+) True G18865
TU23352 lncRNA upstream 439538 49380603 ~ 49382195 (+) False AMCG00017167
TU23309 lncRNA upstream 610477 49206808 ~ 49211256 (+) True G18791
TU23626 lncRNA downstream 323279 50154358 ~ 50154694 (+) True G19040
TU23628 lncRNA downstream 324374 50155453 ~ 50155825 (+) True G19042
TU23647 lncRNA downstream 501387 50332466 ~ 50333366 (+) True G19058
TU23648 lncRNA downstream 502681 50333760 ~ 50334506 (+) True G19059
TU23650 lncRNA downstream 510338 50341417 ~ 50342150 (+) True G19061
AMCG00017189 mRNA upstream 9766 49805827 ~ 49811967 (+) True AMCG00017189
AMCG00017188 mRNA upstream 25578 49790879 ~ 49796155 (+) True AMCG00017188
AMCG00017185 mRNA upstream 40835 49768960 ~ 49780898 (+) True AMCG00017185
AMCG00017184 mRNA upstream 56541 49748843 ~ 49765192 (+) True AMCG00017184
AMCG00017183 mRNA upstream 94166 49713467 ~ 49727567 (+) True AMCG00017183
AMCG00017192 mRNA downstream 20219 49851298 ~ 49905581 (+) True AMCG00017192
AMCG00017195 mRNA downstream 162283 49993362 ~ 49997451 (+) True AMCG00017195
AMCG00017194 mRNA downstream 180853 50011932 ~ 50031382 (+) True AMCG00017194
AMCG00017193 mRNA downstream 214139 50045218 ~ 50061365 (+) True AMCG00017193
AMCG00017196 mRNA downstream 347376 50178455 ~ 50190780 (+) True AMCG00017196
TU23515 other upstream 100262 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 418099 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5165635 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 5690131 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 7423946 42391297 ~ 42397787 (+) True G17697
TU23710 other downstream 720801 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 728371 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 2983174 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2989982 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 3504830 53335909 ~ 53339655 (+) True G19683

Expression Profile