RNA id: AMCG00017206


Basic Information

Item Value
RNA id AMCG00017206
length 1956
RNA type mRNA
GC content 0.46
exon number 12
gene id AMCG00017206
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50517042 ~ 50522542 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACGATATAAAAAATTGTGCACTAGATATGAGtatcatattaaatatgaaGAGTATGATTAAGATTTGACAGAGCTGCCTGCTCTGGGATGGGATCTAGGGCTTGATTAACCAGCACCACTGAGATGACAGAAGCCGTCTTCCAGGCCCCTAAGCGTCGAGCCAGGGTTTACGAGTCCTATGAAGCTCCTTTCCCTGTGCCAACCAATGCAGAGGAAGCTAAACAACAGGAGTACAAGGTCTACACAGCGGAGATGATTAACCAGAATATAATTGTGAGGGATCCAGACCATATACAGGCCATATACGGAAAGGGTTATTTTGGCAAAGGTATCTTATCAAGAAGCAGACCATTGTACAGCATTTCAGACCAGTGGGAGGATCTTGGTTACAGAAGTCTGCCTGTGATTTCTTCCTCCAAGTACCAGCTTCATCTAGACTGGGCCAGGGGGTTTCTCCAAGCACAGGGACTCGATGACGAATCCATCAGTCAGACCCTGGAGAAATACATCAACCCTGTGGAGCTGCCCAGCACTGACAAGACAGCGGAGAAGAATGGAGGCAGCAATGGGATGGAGGGGTCTCCTCGGGAGGATAAGAGAGAAGCGGAGGAACCAAAGTCATCAAGCTGCTCTCCATCCACCGACACGGGACGGCTGAGTGGTCCCCAGTGTGGCTCTCAGTCAAAGAGTCCAGAGAGAAAGAAGGCCCGGAGGCAGGGGGACCGTCAGTTCGATCCCCTGGCTGATATTTATCCAGAGGAACCTGAAGAGATAGACGCTGAAGCCTTGCACGCTGTGAAGTGTGAGAAGCACGACGACTGGCTTGTGCACTGTGGCTGCCGGCTGAAGGACAGTGTCTTGATGACCGTGCTCAAGAACAAGCCAGAAGCACACAGGCCCGCCTTCTCCCCTGGGTGCGAGTACGTACTGactCAAAGAACTGAACGATTAGTCTGCAGAATGAACCCTTTTCGAATGATTGAATACCTGCAGCTGAGTCTAGAAGAGgcATTTTTCTTGGTATACGCATTAGGATGTTTATCCATTTACTATAATGAGGAACCTTTAACAATTCTCAGTCTCTGGGAAATCTTTAGTTCAATCCAACCAAATTTCCAAACCTCCTATGTGGCTTACCACTACTTTAGAAGTAAAGGATGGGTGCCAAAAGTCGGGATGAAATATGGAACAGACCTCTtgctgtaTCGGAAAGGACCTGCATTTTACCACGCCAGCTACTCCGTTGTGGTGGAGAGAGTGGACGACACCCTCCGGGGTGCAGCCTTGAGGCCGTTCAGCTGGCGATCACTGGCTGCTCTCAGTAGGATCACTGGCAATGTTTCCAAGGAGCTGATGCTGTGCTATGTGATCTGGCCACTGGATATGACGGAGGAAGAAAGGTGTTCCCCTGAGTGTCTGAAAAGGATCAGAGTTCAGgagATTATTGTAAGCAGATGGGTTTCTTCACGAGAACGCACCGAACAAGAAGAGATATAACCCAAGGTGTTCAACTGTTTCCCAGCTTATTGTTTCTGACTGAGGACTGACTACAGTGCATTTTTTCAGTAAAACACTCTCCATTCCTGTTCATATTGTGTGACAATGTGCACAACAGGTGTGAACGACAGTGTGTTCTTTAAATGGTTTTAGATTTCATGAAGGTTCATTTAAAGTTAAACCATGCCCTGAAATAATGAGCGGGCAGCTGCTGTTCAGTGCCAAGAGTTACGGATTATTTTGGAGGCTAATGTGGTTTCATGTACAGAGAGGGCTAAACTAGGGTCAGACCCATTTCATTCATGATTGATACTTAACTTCTATCCATATGTGTAAAAAGCTTAGATATGgctgtttatataatatatagacttacatatatgtgaatatttatGGTTATACTGTGCtggaattttgttttattttttgattaaatgttattaaattgtaaaaagaa

Function

GO: NA

KEGG:

id description
K15322 TSEN2; tRNA-splicing endonuclease subunit Sen2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23651 lncRNA upstream 165095 50351252 ~ 50351947 (+) True G19062
TU23650 lncRNA upstream 174892 50341417 ~ 50342150 (+) True G19061
TU23648 lncRNA upstream 182536 50333760 ~ 50334506 (+) True G19059
TU23647 lncRNA upstream 183676 50332466 ~ 50333366 (+) True G19058
TU23628 lncRNA upstream 361217 50155453 ~ 50155825 (+) True G19042
TU23711 lncRNA downstream 36908 50559450 ~ 50563278 (+) True G19114
TU23752 lncRNA downstream 108836 50631378 ~ 50631634 (+) True G19146
TU23759 lncRNA downstream 118045 50640587 ~ 50640802 (+) True G19152
TU23810 lncRNA downstream 205198 50727740 ~ 50728151 (+) True G19195
TU23870 lncRNA downstream 614751 51137293 ~ 51138835 (+) True G19245
AMCG00017205 mRNA upstream 3687 50501043 ~ 50513355 (+) True AMCG00017205
AMCG00017202 mRNA upstream 40287 50458963 ~ 50476755 (+) True AMCG00017202
AMCG00017201 mRNA upstream 71245 50441547 ~ 50445797 (+) True AMCG00017201
AMCG00017204 mRNA upstream 113418 50403319 ~ 50403624 (+) True AMCG00017204
AMCG00017198 mRNA upstream 213417 50271231 ~ 50303625 (+) True AMCG00017198
AMCG00017207 mRNA downstream 4271 50526813 ~ 50537670 (+) True AMCG00017207
AMCG00017212 mRNA downstream 92697 50615239 ~ 50621947 (+) True AMCG00017212
AMCG00017210 mRNA downstream 109566 50632108 ~ 50638968 (+) True AMCG00017210
AMCG00017211 mRNA downstream 122570 50645112 ~ 50652585 (+) True AMCG00017211
AMCG00017209 mRNA downstream 141784 50664326 ~ 50672185 (+) True AMCG00017209
TU23515 other upstream 795571 49713524 ~ 49721471 (+) False AMCG00017183
TU23388 other upstream 1113408 49402719 ~ 49403634 (+) False AMCG00017173
TU22550 other upstream 5860944 44654652 ~ 44656098 (+) True G18192
TU22431 other upstream 6385440 44126214 ~ 44131602 (+) False AMCG00017078
TU21955 other upstream 8119255 42391297 ~ 42397787 (+) True G17697
TU23710 other downstream 29338 50551880 ~ 50552985 (+) True G19113
TU23712 other downstream 36908 50559450 ~ 50561788 (+) False G19114
TU24289 other downstream 2291711 52814253 ~ 52817098 (+) False AMCG00017280
TU24309 other downstream 2298519 52821061 ~ 52834042 (+) True AMCG00017287
TU24421 other downstream 2813367 53335909 ~ 53339655 (+) True G19683

Expression Profile