Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00017207 |
| length | 846 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 5 |
| gene id | AMCG00017207 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 50526813 ~ 50537670 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0016874 | ligase activity | molecular_function |
| id | description |
|---|---|
| K15687 | MKRN; E3 ubiquitin-protein ligase makorin |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU23651 | lncRNA | upstream | 174866 | 50351252 ~ 50351947 (+) | True | G19062 |
| TU23650 | lncRNA | upstream | 184663 | 50341417 ~ 50342150 (+) | True | G19061 |
| TU23648 | lncRNA | upstream | 192307 | 50333760 ~ 50334506 (+) | True | G19059 |
| TU23647 | lncRNA | upstream | 193447 | 50332466 ~ 50333366 (+) | True | G19058 |
| TU23628 | lncRNA | upstream | 370988 | 50155453 ~ 50155825 (+) | True | G19042 |
| TU23711 | lncRNA | downstream | 21780 | 50559450 ~ 50563278 (+) | True | G19114 |
| TU23752 | lncRNA | downstream | 93708 | 50631378 ~ 50631634 (+) | True | G19146 |
| TU23759 | lncRNA | downstream | 102917 | 50640587 ~ 50640802 (+) | True | G19152 |
| TU23810 | lncRNA | downstream | 190070 | 50727740 ~ 50728151 (+) | True | G19195 |
| TU23870 | lncRNA | downstream | 599623 | 51137293 ~ 51138835 (+) | True | G19245 |
| AMCG00017206 | mRNA | upstream | 4271 | 50517042 ~ 50522542 (+) | True | AMCG00017206 |
| AMCG00017205 | mRNA | upstream | 13458 | 50501043 ~ 50513355 (+) | True | AMCG00017205 |
| AMCG00017202 | mRNA | upstream | 50058 | 50458963 ~ 50476755 (+) | True | AMCG00017202 |
| AMCG00017201 | mRNA | upstream | 81016 | 50441547 ~ 50445797 (+) | True | AMCG00017201 |
| AMCG00017204 | mRNA | upstream | 123189 | 50403319 ~ 50403624 (+) | True | AMCG00017204 |
| AMCG00017212 | mRNA | downstream | 77569 | 50615239 ~ 50621947 (+) | True | AMCG00017212 |
| AMCG00017210 | mRNA | downstream | 94438 | 50632108 ~ 50638968 (+) | True | AMCG00017210 |
| AMCG00017211 | mRNA | downstream | 107442 | 50645112 ~ 50652585 (+) | True | AMCG00017211 |
| AMCG00017209 | mRNA | downstream | 126656 | 50664326 ~ 50672185 (+) | True | AMCG00017209 |
| AMCG00017217 | mRNA | downstream | 159176 | 50696846 ~ 50711492 (+) | True | AMCG00017217 |
| TU23515 | other | upstream | 805342 | 49713524 ~ 49721471 (+) | False | AMCG00017183 |
| TU23388 | other | upstream | 1123179 | 49402719 ~ 49403634 (+) | False | AMCG00017173 |
| TU22550 | other | upstream | 5870715 | 44654652 ~ 44656098 (+) | True | G18192 |
| TU22431 | other | upstream | 6395211 | 44126214 ~ 44131602 (+) | False | AMCG00017078 |
| TU21955 | other | upstream | 8129026 | 42391297 ~ 42397787 (+) | True | G17697 |
| TU23710 | other | downstream | 14210 | 50551880 ~ 50552985 (+) | True | G19113 |
| TU23712 | other | downstream | 21780 | 50559450 ~ 50561788 (+) | False | G19114 |
| TU24289 | other | downstream | 2276583 | 52814253 ~ 52817098 (+) | False | AMCG00017280 |
| TU24309 | other | downstream | 2283391 | 52821061 ~ 52834042 (+) | True | AMCG00017287 |
| TU24421 | other | downstream | 2798239 | 53335909 ~ 53339655 (+) | True | G19683 |
